One more question for the Galaxy gurus. I have a series of tools that 1) interleave raw reads, 2) assemble them, and 3) predict genes from the assembly. How can I display inheritance on the data produced from these tools? It would be really nice if a set of genes showed that they came from an assembly, which came from a set of raw reads. I can't find this on the site, and so I am sure I am using the wrong keywords or something... Thank you! -- Lee Katz, Ph.D.
What you envision probably isn't possible yet. Two ideas for extending Galaxy: (1) use the "show structure" functionality from the history menu to generate a summary page or (2) create a Pages API and implement a function to create and save a new page that describes the structure. Best, J. On Jul 17, 2013, at 4:15 PM, Lee Katz wrote:
One more question for the Galaxy gurus. I have a series of tools that 1) interleave raw reads, 2) assemble them, and 3) predict genes from the assembly. How can I display inheritance on the data produced from these tools? It would be really nice if a set of genes showed that they came from an assembly, which came from a set of raw reads.
I can't find this on the site, and so I am sure I am using the wrong keywords or something...
Thank you!
-- Lee Katz, Ph.D. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Showing the structure seems to be ok. Thanks! On Thu, Jul 18, 2013 at 12:08 PM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:
What you envision probably isn't possible yet.
Two ideas for extending Galaxy:
(1) use the "show structure" functionality from the history menu to generate a summary page
or
(2) create a Pages API and implement a function to create and save a new page that describes the structure.
Best, J.
On Jul 17, 2013, at 4:15 PM, Lee Katz wrote:
One more question for the Galaxy gurus. I have a series of tools that 1) interleave raw reads, 2) assemble them, and 3) predict genes from the assembly. How can I display inheritance on the data produced from these tools? It would be really nice if a set of genes showed that they came from an assembly, which came from a set of raw reads.
I can't find this on the site, and so I am sure I am using the wrong keywords or something...
Thank you!
-- Lee Katz, Ph.D. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Lee Katz, Ph.D.
participants (2)
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Jeremy Goecks -
Lee Katz