missing "fastq groomer" tool on galaxy cloudman
Hello, I am using galaxy on amazon web servers ( AMI: ami-a7dbf6ce; Name: Galaxy CloudMan 2.3). This is a setup I have used several time in the past with no issue, for suddenly since yesterday- there is *NO option of fastq groomer tool* on this ami. fastq groomer tool is still available on public server but not on aws cloudman. Anyone has any information on this? best, Namit
Hi Namit, This is an oversight and that tool should be installed by default. We'll make it so in the next Cloudman release. That said, it's really easy to install this (and other tools) on your cloud instances using the toolshed. Steps: - Make yourself an admin user (see the cloudman admin interface for an easy way to do this). - Log into your Galaxy as this admin. - Click "Admin" in the masthead, "Search and browse tool sheds" on the left side, select "Galaxy main tool shed", search for "fastq_groomer". - Click fastq_groomer and then pick "Install to Galaxy", following the rest of the prompts. Let me know if you run into any issues with this, -Dannon On Fri, Oct 10, 2014 at 1:10 PM, NAMIT KUMAR <nk336@scarletmail.rutgers.edu> wrote:
Hi, I have a basic install question. I am trying to install Galaxy on my computer (Mac) and I think I have downloaded all necessary files (Galaxy and mercurial, and I have python 2.6), but I think I have the files in wrong place (in my user folder) and when I try t do hg for example it says I do not have it. I think I have to set the path or move them where they should be. Please help. Thanks, Masi On Oct 10, 2014, at 1:10 PM, NAMIT KUMAR wrote:
participants (3)
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Dannon Baker
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Masoumeh Sikaroodi
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NAMIT KUMAR