Dear all For each bam file in my history I can download the associated bai (bam index) file. I assume these files are stored somewhere under /mount/galaxy/database/files/_metadata_files. Correct? Is there an easy way to find the bam index file for a bam file, given only the internal file name of the bam (e.g. /mont/galaxy/database/files/089/dataset_89231.dat)? I am asking because I would like to use the files_to_ftp tool to automatically download bams together with their associated indices. Thanks Ulf ************************************************************************** The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of Public Health England, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses by Symantec.Cloud, but please re-sweep any attachments before opening or saving. http://www.gov.uk/PHE ************************************************************************** ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/