If you're just starting out with this install, I'd try to figure out what's going wrong just to avoid any issues. This happens reproducibly every time, if you drop/recreate? Are you able to add any extra debugging output to migration script 103 (I'm assuming it failed on exit of 103, or in 104) to get an error message?

On Thu, Nov 21, 2013 at 6:53 AM, Jager, Victor de V.deJager@nioo.knaw.nlwrote:

Hi all,

I'm installing a new galaxy instance and run into an issue after switching to postgres. During the migration setps I get the following error

galaxy.model.migrate.check INFO 2013-11-21 15:37:23,238 galaxy.model.migrate.check INFO 2013-11-21 15:37:23,238 Migrating 103 -> 104... galaxy.model.migrate.check INFO 2013-11-21 15:37:23,257 galaxy.model.migrate.check INFO 2013-11-21 15:37:23,257 Migrating 104 -> 105... galaxy.model.migrate.check INFO 2013-11-21 15:37:25,413 galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 Migration script to add the cleanup_event* tables. galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 Migrating 105 -> 106... galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 Traceback (most recent call last): File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/app.py", line 54, in __init__ create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options, app=self ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line 66, in create_or_verify_database migrate_to_current_version( engine, db_schema ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line 124, in migrate_to_current_version schema.runchange( ver, change, changeset.step ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/schema.py", line 89, in runchange (self.version, startver)) InvalidVersionError: 103 is not 105

./manage_db.sh upgrade seems to finish the migration.

How do I ensure the database is in a healthy state?

Ubuntu 12.04.3 LTS PostgreSQL 9.1 Connection via socket Installation as local galaxy user Installation started in virtual environment

Victor

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