Hi all,
I'm installing a new galaxy instance and run into an issue after switching to postgres. During the migration setps I get the following error
galaxy.model.migrate.check INFO 2013-11-21 15:37:23,238 galaxy.model.migrate.check INFO 2013-11-21 15:37:23,238 Migrating 103 -> 104... galaxy.model.migrate.check INFO 2013-11-21 15:37:23,257 galaxy.model.migrate.check INFO 2013-11-21 15:37:23,257 Migrating 104 -> 105... galaxy.model.migrate.check INFO 2013-11-21 15:37:25,413 galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 Migration script to add the cleanup_event* tables. galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 Migrating 105 -> 106... galaxy.model.migrate.check INFO 2013-11-21 15:37:25,414 Traceback (most recent call last): File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/app.py", line 54, in __init__ create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options, app=self ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line 66, in create_or_verify_database migrate_to_current_version( engine, db_schema ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py", line 124, in migrate_to_current_version schema.runchange( ver, change, changeset.step ) File "/mnt/data/home/NIOO/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/schema.py", line 89, in runchange (self.version, startver)) InvalidVersionError: 103 is not 105
./manage_db.sh upgrade seems to finish the migration.
How do I ensure the database is in a healthy state?
Ubuntu 12.04.3 LTS PostgreSQL 9.1 Connection via socket Installation as local galaxy user Installation started in virtual environment
Victor