Workflow editor stuck on loading workflow
It looks like a recent commit since 6/26 to 15.05 is break the workflow editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
Hmmm this only happens on a specific workflow. How can I debug this? On Tue, Jul 14, 2015 at 3:37 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
It looks like a recent commit since 6/26 to 15.05 is break the workflow editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
Hi Ryan, try to look at the JS console. I suspect some problem with one of the tools in your workflow. Cheers, Bjoern Am 14.07.2015 um 22:02 schrieb Ryan G:
Hmmm this only happens on a specific workflow. How can I debug this?
On Tue, Jul 14, 2015 at 3:37 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
It looks like a recent commit since 6/26 to 15.05 is break the workflow editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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The error I see is "TypeError: c.effectiveMapOver is not a function" in static/scripts/galaxy.workflow_editor.canvas.js?v=1436897004 On Tue, Jul 14, 2015 at 4:50 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Ryan,
try to look at the JS console. I suspect some problem with one of the tools in your workflow.
Cheers, Bjoern
Am 14.07.2015 um 22:02 schrieb Ryan G:
Hmmm this only happens on a specific workflow. How can I debug this?
On Tue, Jul 14, 2015 at 3:37 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
It looks like a recent commit since 6/26 to 15.05 is break the workflow editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Just a quick general suggestion: have you tried clearing your browser cache? Thanks for using Galaxy, Dan On Jul 15, 2015, at 11:18 AM, Ryan G <ngsbioinformatics@gmail.com> wrote:
The error I see is "TypeError: c.effectiveMapOver is not a function" in static/scripts/galaxy.workflow_editor.canvas.js?v=1436897004
On Tue, Jul 14, 2015 at 4:50 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote: Hi Ryan,
try to look at the JS console. I suspect some problem with one of the tools in your workflow.
Cheers, Bjoern
Am 14.07.2015 um 22:02 schrieb Ryan G:
Hmmm this only happens on a specific workflow. How can I debug this?
On Tue, Jul 14, 2015 at 3:37 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
It looks like a recent commit since 6/26 to 15.05 is break the workflow editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Ryan - is this still a problem? I assume there is some use of dataset collections in this workflow? What would be ideal is to determine a minimum combination of data flow (connections) and tools that exhibit this - and then share that workflow and tool with me. If you don't have time for that - maybe just attempting to export the workflow and sending it to me. I cannot make any promises but I can try to look it over. Thanks for the bug report - we are doing a lot of work on workflows and the workflow editor and if I encounter this bug and find a fix I will let you know, -John On Wed, Jul 15, 2015 at 4:18 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
The error I see is "TypeError: c.effectiveMapOver is not a function" in static/scripts/galaxy.workflow_editor.canvas.js?v=1436897004
On Tue, Jul 14, 2015 at 4:50 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Ryan,
try to look at the JS console. I suspect some problem with one of the tools in your workflow.
Cheers, Bjoern
Am 14.07.2015 um 22:02 schrieb Ryan G:
Hmmm this only happens on a specific workflow. How can I debug this?
On Tue, Jul 14, 2015 at 3:37 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
It looks like a recent commit since 6/26 to 15.05 is break the workflow editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi - Yes, this is still happening. Clearing my browser's cache didn't help. I suspect this is related to a tool being removed/renamed that is used in the workflow, but not completely sure. Attached is the exported workflow. Let me know if you need anything else to help debug this. Thanks, Ryan On Mon, Jul 27, 2015 at 9:44 AM, John Chilton <jmchilton@gmail.com> wrote:
Ryan - is this still a problem? I assume there is some use of dataset collections in this workflow? What would be ideal is to determine a minimum combination of data flow (connections) and tools that exhibit this - and then share that workflow and tool with me. If you don't have time for that - maybe just attempting to export the workflow and sending it to me. I cannot make any promises but I can try to look it over.
Thanks for the bug report - we are doing a lot of work on workflows and the workflow editor and if I encounter this bug and find a fix I will let you know, -John
On Wed, Jul 15, 2015 at 4:18 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
The error I see is "TypeError: c.effectiveMapOver is not a function" in static/scripts/galaxy.workflow_editor.canvas.js?v=1436897004
On Tue, Jul 14, 2015 at 4:50 PM, Björn Grüning < bjoern.gruening@gmail.com> wrote:
Hi Ryan,
try to look at the JS console. I suspect some problem with one of the tools in your workflow.
Cheers, Bjoern
Am 14.07.2015 um 22:02 schrieb Ryan G:
Hmmm this only happens on a specific workflow. How can I debug this?
On Tue, Jul 14, 2015 at 3:37 PM, Ryan G <ngsbioinformatics@gmail.com> wrote:
It looks like a recent commit since 6/26 to 15.05 is break the
workflow
editor. I have a pipeline I'm trying to edit. I updated my instance of Galaxy and now when I try to edit a workflow, the editor is stuck at "Loading workflow editor".
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (4)
-
Björn Grüning -
Daniel Blankenberg -
John Chilton -
Ryan G