Thanks for your response. I figured out it was some extra text at the end of the xml file that was preventing galaxy from reading the file.

I also was confused about how to setup the proxy. For Ubuntu, the apache2 configuration file is in /etc/apache2/sites-available/default (using virtual servers by default)

I was initially working with /etc/apache2/httpd.conf which I think may be the standard in other distros.

Jeremy

On Thu, Nov 3, 2011 at 7:23 PM, Jennifer Jackson jen@bx.psu.edu wrote:

Hello Jeremy,

Galaxy does not come with a display tool for UCSC. There is an integrated display tool, under Visualization, commonly called "Trackster". The icon for Trackster is a set of colored, stacked bars that when hovered over is labeled "Visualize in Trackster".

If you do want to display at the public (or a local mirror) UCSC browser, then some additional set-up is required. Here are the links to the details, including a tutorial:

http://wiki.g2.bx.psu.edu/**Admin/Config/Apache%20Proxyhttp://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy(scroll to Display at UCSC)

http://wiki.g2.bx.psu.edu/**Admin/Tools/External%** 20Display%20Applications%**20Tutorialhttp://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial

http://wiki.g2.bx.psu.edu/**Admin http://wiki.g2.bx.psu.edu/Admin

Hopefully this helps to get you started,

Jen Galaxy team

On 11/2/11 3:52 PM, Jeremy Villalobos wrote:

...

Hello:

The display tool for UCSC that comes with the local installation package does not work. uploading a bigbed file (from the test-data that comes with the package) does not trigger the webapp to show an option to view the file using UCSC's viewer.

How do I enable this ?

To reproduce the issue, simply download galaxy using mercurial. change the host address to 0.0.0.0. and load the bigbed file from the test-data directory. Once the file uploads, the user should expect to see a display tool added to the files description (on the right), but nothing is shown.

Thanks

Jeremy UNCC

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