can not login to workflows after postgresql setup
Hi all, I have set up postgresql to work with galaxy because the standard mysqlite didn't work with my workflow. Now that postgresql seems to be working I can not login to galaxy. When I try to login it says that it can't find my username. And also when I click "forgot password" it says: "Mail is not configured for this Galaxy instance. Please contact an administrator." Any ideas? Kind Regards Jaap
Hi all, I did manage to log in now after the postgres installation by re-registering. However my workflow is gone. Is there a file stored in galaxy by default which I can reupload to retrieve my workflow?. Also it seems that I am no longer able to upload files. It's only a 300kb test file but it seems to be uploading forever. I'm guessing that some settings need to be adjusted. But I have no clue which ones. Help is very much appreciated! Jaap ________________________________________ From: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] on behalf of J.W.F.van_der_Heijden@lumc.nl [J.W.F.van_der_Heijden@lumc.nl] Sent: Wednesday, July 04, 2012 2:29 PM To: bernd.jagla@pasteur.fr; galaxy-dev@lists.bx.psu.edu Subject: [galaxy-dev] can not login to workflows after postgresql setup Hi all, I have set up postgresql to work with galaxy because the standard mysqlite didn't work with my workflow. Now that postgresql seems to be working I can not login to galaxy. When I try to login it says that it can't find my username. And also when I click "forgot password" it says: "Mail is not configured for this Galaxy instance. Please contact an administrator." Any ideas? Kind Regards Jaap ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
I did manage to log in now after the postgres installation by re-registering. However my workflow is gone. Is there a file stored in galaxy by default which I can reupload to retrieve my workflow?.
Moving to a new database will make all your previous data inaccessible as it's no longer in the database that Galaxy is using, so this behavior is expected. You could: (a) reconnect Galaxy to your SQLite database and export (download) your workflow and then (b) change Galaxy to use your PostGres database and import (upload) your workflow.
Also it seems that I am no longer able to upload files. It's only a 300kb test file but it seems to be uploading forever.
The database used should not affect uploading. Are you still having problems? Best, J.
Hi all, I tried to reconnect with the SQLite database but this time when I try to log in to use workflows it says that my password is invalid. When I try to reset it with the forgotten password option I get this message again: Mail is not configured for this Galaxy instance. Please contact an administrator. What can I do? Jaap ________________________________________ From: Jeremy Goecks [jeremy.goecks@emory.edu] Sent: Wednesday, July 04, 2012 11:38 PM To: Heijden, J.W.F. van der (HG) Cc: bernd.jagla@pasteur.fr; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] can not login to workflows after postgresql setup
I did manage to log in now after the postgres installation by re-registering. However my workflow is gone. Is there a file stored in galaxy by default which I can reupload to retrieve my workflow?.
Moving to a new database will make all your previous data inaccessible as it's no longer in the database that Galaxy is using, so this behavior is expected. You could: (a) reconnect Galaxy to your SQLite database and export (download) your workflow and then (b) change Galaxy to use your PostGres database and import (upload) your workflow.
Also it seems that I am no longer able to upload files. It's only a 300kb test file but it seems to be uploading forever.
The database used should not affect uploading. Are you still having problems? Best, J.
Hi, Any ideas yet on how to configure my mail in galaxy? Kind regards Jaap ________________________________________ From: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] on behalf of J.W.F.van_der_Heijden@lumc.nl [J.W.F.van_der_Heijden@lumc.nl] Sent: Friday, July 06, 2012 11:13 AM To: jeremy.goecks@emory.edu Cc: bernd.jagla@pasteur.fr; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] can not login to workflows after postgresql setup Hi all, I tried to reconnect with the SQLite database but this time when I try to log in to use workflows it says that my password is invalid. When I try to reset it with the forgotten password option I get this message again: Mail is not configured for this Galaxy instance. Please contact an administrator. What can I do? Jaap ________________________________________ From: Jeremy Goecks [jeremy.goecks@emory.edu] Sent: Wednesday, July 04, 2012 11:38 PM To: Heijden, J.W.F. van der (HG) Cc: bernd.jagla@pasteur.fr; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] can not login to workflows after postgresql setup
I did manage to log in now after the postgres installation by re-registering. However my workflow is gone. Is there a file stored in galaxy by default which I can reupload to retrieve my workflow?.
Moving to a new database will make all your previous data inaccessible as it's no longer in the database that Galaxy is using, so this behavior is expected. You could: (a) reconnect Galaxy to your SQLite database and export (download) your workflow and then (b) change Galaxy to use your PostGres database and import (upload) your workflow.
Also it seems that I am no longer able to upload files. It's only a 300kb test file but it seems to be uploading forever.
The database used should not affect uploading. Are you still having problems? Best, J. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
For mail configuration, see the "Mail and Notification" section in your universe_wsgi.ini -- all you need to do is specify an SMTP server that Galaxy can use. Regarding the invalid password, keep in mind that this would be your previously registered password (from when you were using the sqlite database originally), and not the one you used when you reregistered with a postgres database. -Dannon On Jul 6, 2012, at 8:26 AM, J.W.F.van_der_Heijden@lumc.nl wrote:
Hi,
Any ideas yet on how to configure my mail in galaxy?
Kind regards
Jaap
________________________________________ From: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] on behalf of J.W.F.van_der_Heijden@lumc.nl [J.W.F.van_der_Heijden@lumc.nl] Sent: Friday, July 06, 2012 11:13 AM To: jeremy.goecks@emory.edu Cc: bernd.jagla@pasteur.fr; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] can not login to workflows after postgresql setup
Hi all,
I tried to reconnect with the SQLite database but this time when I try to log in to use workflows it says that my password is invalid. When I try to reset it with the forgotten password option I get this message again:
Mail is not configured for this Galaxy instance. Please contact an administrator.
What can I do?
Jaap
________________________________________ From: Jeremy Goecks [jeremy.goecks@emory.edu] Sent: Wednesday, July 04, 2012 11:38 PM To: Heijden, J.W.F. van der (HG) Cc: bernd.jagla@pasteur.fr; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] can not login to workflows after postgresql setup
I did manage to log in now after the postgres installation by re-registering. However my workflow is gone. Is there a file stored in galaxy by default which I can reupload to retrieve my workflow?.
Moving to a new database will make all your previous data inaccessible as it's no longer in the database that Galaxy is using, so this behavior is expected. You could:
(a) reconnect Galaxy to your SQLite database and export (download) your workflow and then (b) change Galaxy to use your PostGres database and import (upload) your workflow.
Also it seems that I am no longer able to upload files. It's only a 300kb test file but it seems to be uploading forever.
The database used should not affect uploading. Are you still having problems?
Best, J.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
-
Dannon Baker -
J.W.F.van_der_Heijden＠lumc.nl -
Jeremy Goecks