Problem with displaying wiggle file in galaxy.
Dear Galaxy Team, I would like to visualize a wiggle format file in my galaxy instance. I made initial set up for visualization and I am not able to find my track display. Here I am attaching my screen shot, please find it. less from my wiggle file, track type=wiggle_0 name=test variableStep chrom=I I 3749 1 I 3750 1 I 3751 1 I 3752 1 I 3753 1 I 3754 1 I 3755 1 I 3756 1 I 3757 1 I 3758 1 I 3759 1 I 3760 1 I 3761 1 I 3762 1 I 3763 1 I 3764 1 I 3765 1 I 3766 3 I 3767 5 I 3768 6 I 3769 6 I 3770 6 I 3771 6 I 3772 6 It will be great if you can suggest me a way to solve the display problem. Many thanks, Vipin
Hi Vipin, Our current build system does not have the correct dependencies for wig files to be displayed, and we are working on it. When it is finished, you will be able to use it on our main instance as well. Thanks for trying it out and please let me know if you find any other bugs. Kanwei On Mon, Mar 1, 2010 at 11:55 AM, Vipin TS <vipin.ts@gmail.com> wrote:
Dear Galaxy Team,
I would like to visualize a wiggle format file in my galaxy instance. I made initial set up for visualization and I am not able to find my track display. Here I am attaching my screen shot, please find it.
less from my wiggle file,
track type=wiggle_0 name=test variableStep chrom=I I 3749 1 I 3750 1 I 3751 1 I 3752 1 I 3753 1 I 3754 1 I 3755 1 I 3756 1 I 3757 1 I 3758 1 I 3759 1 I 3760 1 I 3761 1 I 3762 1 I 3763 1 I 3764 1 I 3765 1 I 3766 3 I 3767 5 I 3768 6 I 3769 6 I 3770 6 I 3771 6 I 3772 6
It will be great if you can suggest me a way to solve the display problem.
Many thanks, Vipin
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Hi Kanwei, Thanks for your information. I tried with BED formatted file for data visualization, but it doesn't give the result. Hope these two are under development. Then I found a problem with uploading the bed/wig file. That is when we click on 'Add Track' button the display box which contains the bed/wig files don't have scrolling bar in the right side. So it will make a problem with inserting a file in the down side of the display box. It will be great if you can add a scroll bar. Thanks for considering. Please find the attached screen shot. Hope you got the same. If not please let me know. Thanks, Vipin Hi Vipin,
Our current build system does not have the correct dependencies for wig files to be displayed, and we are working on it. When it is finished, you will be able to use it on our main instance as well. Thanks for trying it out and please let me know if you find any other bugs.
Kanwei
Dear Galaxy Team,
I would like to visualize a wiggle format file in my galaxy instance. I made initial set up for visualization and I am not able to find my track display. Here I am attaching my screen shot, please find it.
less from my wiggle file,
track type=wiggle_0 name=test variableStep chrom=I I 3749 1 I 3750 1 I 3751 1 I 3752 1 I 3753 1 I 3754 1 I 3755 1 I 3756 1 I 3757 1 I 3758 1 I 3759 1 I 3760 1 I 3761 1 I 3762 1 I 3763 1 I 3764 1 I 3765 1 I 3766 3 I 3767 5 I 3768 6 I 3769 6 I 3770 6 I 3771 6 I 3772 6
It will be great if you can suggest me a way to solve the display
On Mon, Mar 1, 2010 at 11:55 AM, Vipin TS <vipin.ts@gmail.com> wrote: problem.
Many thanks, Vipin
_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Then I found a problem with uploading the bed/wig file. That is when we click on 'Add Track' button the display box which contains the bed/wig files don't have scrolling bar in the right side. So it will make a problem with inserting a file in the down side of the display box. It will be great if you can add a scroll bar. Thanks for considering. Please find the attached screen shot. Hope you got the same. If not please let me know.
This is fixed in changeset 3486:1cd52787c0bb Vipin, you can update your Galaxy instance to get this fix (which isn't especially since the viz is still under development). Thanks, J.
participants (3)
-
Jeremy Goecks -
Kanwei Li -
Vipin TS