Attempting to bind to AMQP message queue, but kombu dependency unavailable
Hi all, I just updated my development server, and ran into what looks like a missing dependency: $ ./run.sh ... galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers Traceback (most recent call last): File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__ self.job_manager = manager.JobManager( self ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__ self.job_handler = handler.JobHandler( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__ self.dispatcher = DefaultJobDispatcher( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576, in __init__ self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496, in get_job_runner_plugins rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__ self.client_manager = build_client_manager(**client_manager_kwargs) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 41, in build_client_manager return MessageQueueClientManager(**kwargs) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 89, in __init__ self.exchange = LwrExchange(self.url, self.manager_name) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py", line 37, in __init__ raise Exception(KOMBU_UNAVAILABLE) Exception: Attempting to bind to AMQP message queue, but kombu dependency unavailable $ hg summary parent: 13557:75b13d642f94 tip Allow LWR runner to publish/consume messages via message queue. branch: default commit: 9 modified, 240 unknown update: (current) (Local modifications mostly extra logging lines; nothing which looked relevant here) Regards, Peter
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <p.j.a.cock@googlemail.com>wrote:
Hi all,
I just updated my development server, and ran into what looks like a missing dependency:
$ ./run.sh ... galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers Traceback (most recent call last): File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__ self.job_manager = manager.JobManager( self ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__ self.job_handler = handler.JobHandler( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__ self.dispatcher = DefaultJobDispatcher( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576, in __init__ self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496, in get_job_runner_plugins rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__ self.client_manager = build_client_manager(**client_manager_kwargs) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 41, in build_client_manager return MessageQueueClientManager(**kwargs) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 89, in __init__ self.exchange = LwrExchange(self.url, self.manager_name) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py", line 37, in __init__ raise Exception(KOMBU_UNAVAILABLE) Exception: Attempting to bind to AMQP message queue, but kombu dependency unavailable
$ hg summary parent: 13557:75b13d642f94 tip Allow LWR runner to publish/consume messages via message queue. branch: default commit: 9 modified, 240 unknown update: (current)
(Local modifications mostly extra logging lines; nothing which looked relevant here)
Regards,
Peter
Also (not unexpectedly) breaking my TravisCI tool tests, e.g. https://travis-ci.org/peterjc/pico_galaxy/builds/19101036 Peter
That should be fixed now, sorry about that. -John On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi all,
I just updated my development server, and ran into what looks like a missing dependency:
$ ./run.sh ... galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers Traceback (most recent call last): File "/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__ self.job_manager = manager.JobManager( self ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__ self.job_handler = handler.JobHandler( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__ self.dispatcher = DefaultJobDispatcher( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576, in __init__ self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496, in get_job_runner_plugins rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__ self.client_manager = build_client_manager(**client_manager_kwargs) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 41, in build_client_manager return MessageQueueClientManager(**kwargs) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py", line 89, in __init__ self.exchange = LwrExchange(self.url, self.manager_name) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py", line 37, in __init__ raise Exception(KOMBU_UNAVAILABLE) Exception: Attempting to bind to AMQP message queue, but kombu dependency unavailable
$ hg summary parent: 13557:75b13d642f94 tip Allow LWR runner to publish/consume messages via message queue. branch: default commit: 9 modified, 240 unknown update: (current)
(Local modifications mostly extra logging lines; nothing which looked relevant here)
Regards,
Peter
Also (not unexpectedly) breaking my TravisCI tool tests, e.g. https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
Peter
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Hi John, Fix confirmed - nice timing, I just finished my lunch break :) Thanks! Peter On Tue, Feb 18, 2014 at 12:35 PM, John Chilton <jmchilton@gmail.com> wrote:
That should be fixed now, sorry about that.
-John
On Tue, Feb 18, 2014 at 6:07 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Tue, Feb 18, 2014 at 12:00 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi all,
I just updated my development server, and ran into what looks like a missing dependency:
$ ./run.sh ... galaxy.jobs.manager DEBUG 2014-02-18 11:58:06,422 Starting job handler galaxy.jobs INFO 2014-02-18 11:58:06,422 Handler 'main' will load all configured runner plugins galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,423 Starting 5 LocalRunner workers galaxy.jobs DEBUG 2014-02-18 11:58:06,425 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local' galaxy.jobs.runners DEBUG 2014-02-18 11:58:06,460 Starting 3 LWRRunner workers Traceback (most recent call last): File
"/mnt/galaxy/galaxy-central/lib/galaxy/webapps/galaxy/buildapp.py",
line 39, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/mnt/galaxy/galaxy-central/lib/galaxy/app.py", line 130, in __init__ self.job_manager = manager.JobManager( self ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/manager.py", line 31, in __init__ self.job_handler = handler.JobHandler( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 31, in __init__ self.dispatcher = DefaultJobDispatcher( app ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/handler.py", line 576, in __init__ self.job_runners = self.app.job_config.get_job_runner_plugins( self.app.config.server_name ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/__init__.py", line 496, in get_job_runner_plugins rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) ) File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr.py", line 45, in __init__ self.client_manager = build_client_manager(**client_manager_kwargs) File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
line 41, in build_client_manager return MessageQueueClientManager(**kwargs) File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/manager.py",
line 89, in __init__ self.exchange = LwrExchange(self.url, self.manager_name) File
"/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/lwr_client/amqp_exchange.py",
line 37, in __init__ raise Exception(KOMBU_UNAVAILABLE) Exception: Attempting to bind to AMQP message queue, but kombu dependency unavailable
$ hg summary parent: 13557:75b13d642f94 tip Allow LWR runner to publish/consume messages via message queue. branch: default commit: 9 modified, 240 unknown update: (current)
(Local modifications mostly extra logging lines; nothing which looked relevant here)
Regards,
Peter
Also (not unexpectedly) breaking my TravisCI tool tests, e.g. https://travis-ci.org/peterjc/pico_galaxy/builds/19101036
Peter
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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participants (2)
-
John Chilton -
Peter Cock