the gfap tool from the main toolshed has a annovar wrapper included.
Maybe that is something for you.
I have a new project that requires setting up a local Galaxy instance
for a client including integrating new tools and some reference data
I’m new to the Galaxy community so am also learning along the way.
There’s been a request to integrate the ANNOVAR tool for their system.
I’ve searched the mailing-list archive and found this question was
posed earlier in the year but there was no reply.
I couldn’t find any tool wrappers for it on Toolshed, but considering
it is such a widely-used tool, I’m wondering whether anyone has any
knowledge if this tool has been wrapped for Galaxy before?
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