Hi Kostas, look in ~/lib/galaxy/util/__init__.py: # characters that are allowed but need to be escaped mapped_chars = { '>' :'__gt__', '<' :'__lt__', "'" :'__sq__', '"' :'__dq__', '[' :'__ob__', ']' :'__cb__', '{' :'__oc__', '}' :'__cc__', '@' : '__at__', '\n' : '__cn__', '\r' : '__cr__', '\t' : '__tc__' } On Mar 11, 2011, at 6:11 AM, Kostas Karasavvas wrote:

Hi all!

I found the following in the mailing list archives. Does anyone know where I can find a complete list of the sanitization taking place? '>' __gt__ '@' __at__ etc.

Thank you, Kostas

************************ It's worth noting that command line parameters are sanitized for security purposes, so passing them unsanitized should only be done in controlled environments where security is not a concern. Otherwise, parameters should be restored to their original values by the tool or a wrapper around the tool.

--nate

On Oct 5, 2010, at 10:10, Jelle Scholtalbers <j.scholtalbers at gmail.com> wrote:

...

Hi,

take a look at <options sanitize="False" /> as used also in tools/fastq/fastq_manipulation.xml

Cheers, Jelle

On Tue, Oct 5, 2010 at 12:39 AM, Zhe Chen <zhe at lanl.gov> wrote:

...

Hi,

I was implementing a galaxy tool. A problem occurs when my input contains ">", linebreak, galaxy seems traslate them to __gt__, __cr____cn__. Is there a way to stop this translation?

Or suggestion to fix this problem?

Thanks

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