Thanks for the link, Scott, I've confirmed that setting the job runner as pbs://machine.name/queue.name/-l nodes=n:ppn=m -c enabled/ in universe_wsgi does not work. Luobin On Mon, Nov 5, 2012 at 10:30 AM, Scott McManus <scottmcmanus@gatech.edu>wrote:

I recommend checking out John Chilton's dynamic job runner first: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html

-Scott

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Hi, guys,

I would like to enable checkpoint and restart for some galaxy jobs. In order to do that, I need to add "-c enabled" option when using "qsub" to submit a job. What files should I change to add this option? I am using Torque PBS job runner.

Thanks, Luobin

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