Hi, guys,
I would like to enable checkpoint and restart for some galaxy jobs. In order to do that, I need to add "-c enabled" option when using "qsub" to submit a job. What files should I change to add this option? I am using Torque PBS job runner.
Thanks, Luobin
I recommend checking out John Chilton's dynamic job runner first: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html
-Scott
----- Original Message -----
Hi, guys,
I would like to enable checkpoint and restart for some galaxy jobs. In order to do that, I need to add "-c enabled" option when using "qsub" to submit a job. What files should I change to add this option? I am using Torque PBS job runner.
Thanks, Luobin
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Thanks for the link, Scott, I've confirmed that setting the job runner as pbs://machine.name/queue.name/-l nodes=n:ppn=m -c enabled/ in universe_wsgi does not work.
Luobin
On Mon, Nov 5, 2012 at 10:30 AM, Scott McManus scottmcmanus@gatech.eduwrote:
I recommend checking out John Chilton's dynamic job runner first: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html
-Scott
Hi, guys,
I would like to enable checkpoint and restart for some galaxy jobs. In order to do that, I need to add "-c enabled" option when using "qsub" to submit a job. What files should I change to add this option? I am using Torque PBS job runner.
Thanks, Luobin
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-dev@lists.galaxyproject.org