Without seeing an error message I'll guess that issue is that there is no C interpreter. Your program is a compiled executable.

Try the following and let me know (including any error messages) if it doesn't work:

<command> shortest_path $infile1 $output </command>

-Dannon

On Apr 22, 2011, at 2:12 AM, liyanhui607 wrote:

Dear Sir, We have a program writen in C lanuage. It can run nomally in linux environment. We plan to add it to galaxy, but it did not work. The C file after complie named "shortest-path" The shortest-path.xml is as follow: Could anybody tell me what is wrong ? why it does not work? Thank you very much!

Best Wishes!

Yan-Hui Li

         <tool id="shortest_path_1" name="shortest_path">
     <command interpreter="C">./shortest_path  $infile1  $output </command>
    <inputs>
            <param format="text" name="infile1" type="data"
                    label="

expressed_genes_20101024.hprd8_biogrid-2.0.58.adj_matrix.txt "/> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <tests> <test> <param name="input" value="1"/> <param name="input" value="../GEO_dataset/expressed_genes_u133a.6k_u133p2.8k_20101024.txt"/> <param name="input" value="../ppi/hprd8_biogrid-2.0.58.ppi.txt"/> <output name="out_file1" file="expressed_genes_20101024.hprd8_biogrid-2.0.58.ppi.txt"/> </test> </tests>

</tool>

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