Hi Galaxy team ! I'am trying to remove userless histories from my galaxy database as mentoned in this link ( by using the command above : python cleanup_datasets.py universe_wsgi.ini -d 60 -1 However I get an error message like this : File "cleanup_datasets.py", line 13, in <module> from galaxy import eggs ImportError: No module named galaxy Although I set cleanup_job = never in my Galaxy config and check the PBS script like mentioned in the mailing list discussions as above , i have always the same problem of galaxy module : GALAXY_LIB="/path/to/galaxy-dist/lib" if [ "$GALAXY_LIB" != "None" ]; then if [ -n "$PYTHONPATH" ]; then export PYTHONPATH="$GALAXY_LIB:$PYTHONPATH" else export PYTHONPATH="$GALAXY_LIB" fi fi Could someone help me please ! Thanks Amine
On 06/19/2012 07:11 PM, Chebbi Mohamed Amine wrote:
Hi Galaxy team ! I'am trying to remove userless histories from my galaxy database as mentoned in this link ( by using the command above : python cleanup_datasets.py universe_wsgi.ini -d 60 -1 However I get an error message like this :
File "cleanup_datasets.py", line 13, in <module> from galaxy import eggs ImportError: No module named galaxy
looks like you are calling the script from: ~/galaxy_dist/scripts/cleanup_datasets/ try calling it with: python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d 60 -1 from: ~/galaxy_dist/ Regards, Hans
Although I set cleanup_job = never in my Galaxy config and check the PBS script like mentioned in the mailing list discussions as above , i have always the same problem of galaxy module :
GALAXY_LIB="/path/to/galaxy-dist/lib" if [ "$GALAXY_LIB" != "None" ]; then if [ -n "$PYTHONPATH" ]; then export PYTHONPATH="$GALAXY_LIB:$PYTHONPATH" else export PYTHONPATH="$GALAXY_LIB" fi fi
Could someone help me please !
Thanks Amine
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Hi Hans-Rudolf; Yes!! I didn't pay attention and i was really calling the script fom ~/galaxy_dist/scripts/cleanup_datasets/. Now when I call it from ~/galaxy_dist/ it works very well. Thanks :) Amine 2012/6/20 Hans-Rudolf Hotz <hrh@fmi.ch>
On 06/19/2012 07:11 PM, Chebbi Mohamed Amine wrote:
Hi Galaxy team ! I'am trying to remove userless histories from my galaxy database as mentoned in this link ( by using the command above : python cleanup_datasets.py universe_wsgi.ini -d 60 -1 However I get an error message like this :
File "cleanup_datasets.py", line 13, in <module> from galaxy import eggs ImportError: No module named galaxy
looks like you are calling the script from:
~/galaxy_dist/scripts/cleanup_**datasets/
try calling it with:
python scripts/cleanup_datasets/**cleanup_datasets.py universe_wsgi.ini -d 60 -1
from: ~/galaxy_dist/
Regards, Hans
Although I set cleanup_job = never in my Galaxy config and check the PBS script like mentioned in the mailing list discussions as above , i have always the same problem of galaxy module :
GALAXY_LIB="/path/to/galaxy-**dist/lib" if [ "$GALAXY_LIB" != "None" ]; then if [ -n "$PYTHONPATH" ]; then export PYTHONPATH="$GALAXY_LIB:$**PYTHONPATH" else export PYTHONPATH="$GALAXY_LIB" fi fi
Could someone help me please !
Thanks Amine
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participants (2)
-
Chebbi Mohamed Amine -
Hans-Rudolf Hotz