Hi Nate/James,
Thanks! Where should I look into to disable PBKDF2 in the Galaxy code?
Cheers,
Leon
On Fri, Aug 9, 2013 at 4:28 PM, James Taylor <james(a)jamestaylor.org> wrote:
For the moment, the best solution is to disable PBKDF2 in Galaxy if
you are also using FTP. That is how Galaxy main is currently
configured.
--
James Taylor, Assistant Professor, Biology/CS, Emory University
On Fri, Aug 9, 2013 at 10:01 AM, Nate Coraor <nate(a)bx.psu.edu> wrote:
> On Aug 9, 2013, at 2:38 AM, Leon Mei wrote:
>
>> Hi Nate,
>>
>> Thanks for the suggestion! Unfortunately, it still failed :(
>>
>> I got the following error message in proftp log:
>>
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: entering postgres
cmd_escapestring
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: entering postgres
cmd_open
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: connection 'default' count
is now 2
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: exiting postgres
cmd_open
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: entering postgres
cmd_close
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: connection 'default' count
is now 1
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: exiting postgres
cmd_close
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: exiting postgres
cmd_escapestring
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: cache hit for user '
hailiang.mei1(a)nbic.nl'
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: >>> cmd_check
>> 2013-08-09 08:32:41,777 mod_sql/4.3[32384]: checking password using
SQLAuthType 'sha1'
>> 2013-08-09 08:32:41,781 mod_sql/4.3[32384]: 'sha1' SQLAuthType handler
reports failure
>> 2013-08-09 08:32:41,781 mod_sql/4.3[32384]: checking password using
SQLAuthType 'sha256'
>> 2013-08-09 08:32:41,781 mod_sql/4.3[32384]: 'sha256' SQLAuthType
handler reports failure
>> 2013-08-09 08:32:41,781 mod_sql/4.3[32384]: checking password using
SQLAuthType 'pbkdf2'
>> 2013-08-09 08:32:41,841 mod_sql/4.3[32384]: 'pbkdf2' SQLAuthType
handler reports failure
>> 2013-08-09 08:32:41,841 mod_sql/4.3[32384]: <<< cmd_check
>> 2013-08-09 08:32:41,841 mod_sql/4.3[32384]: <<< cmd_auth
>>
>> The old user account generated before our code update still works.
>>
>> I wonder how it is configured at the Galaxy main server?
>>
>> Thanks,
>> Leon
>
> It isn't in use on the Main server, but now that I'm aware that ProFTPD
has PBKDF2 support, I will put this on my to-do list for next week to test.
>
> --nate
>
>
>>
>>
>>
>> On Thu, Aug 8, 2013 at 8:45 PM, Nate Coraor <nate(a)bx.psu.edu> wrote:
>> On Jul 26, 2013, at 3:51 PM, Leon Mei wrote:
>>
>> > Dear galaxy developers,
>> >
>> > We have tried today to upgrade our proftpd configuration to make
uploading for our galaxy users possible again, both for users with "old" as
well as "new" style hashed passwords. We upgraded proftpd on the server to
1.3.5rc3 and have the following SQL part in our configuration file based on
the post of
http://dev.list.galaxyproject.org/ProFTPD-integration-with-Galaxy-td46602...
>> >
>> > SQLEngine on
>> > SQLLogFile /var/log/proftpd-sql.log
>> > SQLBackend postgres
>> > SQLConnectInfo galaxy@localhost:5840 galaxyftp
<[ourpassword]>
>> > SQLAuthTypes SHA1 SHA256 PBKDF2
>> > SQLPasswordPBKDF2 SHA256 1000 24
>> > SQLPasswordUserSalt sql:/GetUserSalt
>> > SQLAuthenticate users
>> > SQLDefaultUID 108
>> > SQLDefaultGID 116
>> > SQLDefaultHomedir /opt/cloudman/pkg/proftpd/var
>> > SQLUserInfo custom:/LookupGalaxyUser
>> > SQLNamedQuery LookupGalaxyUser SELECT "email, (CASE WHEN
substring(password from 1 for 6) = 'PBKDF2' THEN substring(password from 38
for 32) ELSE password END) AS
password2,'108','116','/mnt/galaxyData/tmp/ftp/%U','/bin/bash'
FROM
galaxy_user WHERE email='%U'"
>> > SQLNamedQuery GetUserSalt SELECT "(CASE WHEN SUBSTRING (password
from 1 for 6) = 'PBKDF2' THEN SUBSTRING (password from 21 for 16) END) AS
salt FROM galaxy_user WHERE email='%U'"
>> >
>> > We have executed the LookupGalaxyUser and GetUserSalt commands
manually, and the results look good. Now, old users can login via ftp, but
for a new user, the authentication still fails:
>> >
>> > 2013-07-26 13:15:06,989 mod_sql/4.3[31761]: >>> cmd_check
>> > 2013-07-26 13:15:06,989 mod_sql/4.3[31761]: checking password using
SQLAuthType 'sha1'
>> > 2013-07-26 13:15:06,989 mod_sql/4.3[31761]: 'sha1' SQLAuthType
handler reports failure
>> > 2013-07-26 13:15:06,989 mod_sql/4.3[31761]: checking password using
SQLAuthType 'pbkdf2'
>> > 2013-07-26 13:15:06,993 mod_sql/4.3[31761]: 'pbkdf2' SQLAuthType
handler reports failure
>> >
>> > What are we missing?
>> >
>> > Thanks!
>> >
>> > Rob and Leon
>>
>> Hallo Leon and Rob,
>>
>> Thanks for working on this, when I'd looked a couple months ago I could
not find an entirely-ProFTPD way to do this. I think it may have actually
come about because I asked about it on their IRC channel. ;)
>>
>> This may work if you change SQLPasswordPBKDF2:
>>
>> SQLPasswordPBKDF2 SHA256 10000 24
>>
>> It'd be great if ProFTPD also supported pulling those values
dynamically from the database, but Galaxy's PBKDF2 code currently has them
hardcoded, so they will be static anyway.
>>
>> --nate
>>
>> >
>> >
>> > --
>> > Hailiang (Leon) Mei
>> > Netherlands Bioinformatics Center
>> > BioAssist NGS Taskforce
>> > -
http://ngs.nbic.nl
>> > Skype: leon_mei Mobile: +31 6 41709231
>> > ___________________________________________________________
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client. To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >
http://lists.bx.psu.edu/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >
http://galaxyproject.org/search/mailinglists/
>>
>>
>>
>>
>> --
>> Hailiang (Leon) Mei
>> Netherlands Bioinformatics Center
>> BioAssist NGS Taskforce
>> -
http://ngs.nbic.nl
>> Skype: leon_mei Mobile: +31 6 41709231
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>
http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>
http://galaxyproject.org/search/mailinglists/
--
Hailiang (Leon) Mei
Netherlands Bioinformatics Center
BioAssist NGS Taskforce
-