We have had a working local galaxy instance being used with mySQL for almost two years with a lot of new scripts, workflows built-in and datasets still associated with it.
We now would like to move to a new server but rather than start from scratch, would like to move all parts of current instance as is first.
We ran deploy_galaxy.sh of galaxy-admin-utils-master, modifying "hg clone to point to our current instance". As it copied the virtual environment details also, I expected to be able to run start_galaxy.sh without requiring new eggs to be compiled.
Where did I go wrong. Is it always required to re-compile them? Or is there a way to copy the missing eggs.
Error last few lines: Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 37, in <module> c.resolve() # Only fetch eggs required by the config File "/home/ocimum/GalaxyMigrated/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/home/ocimum/GalaxyMigrated/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195, in resolve return self.version_conflict( e.args, e.args ) File "/home/ocimum/GalaxyMigrated/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226, in version_conflict r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env, egg.fetch ) File "/home/ocimum/GalaxyMigrated/galaxy_venv/local/lib/python2.7/site-packages/distribute-0.6.24-py2.7.egg/pkg_resources.py", line 584, in resolve raise DistributionNotFound(req) pkg_resources.DistributionNotFound: numpy==1.6.0 Fetch failed.
________________________________ This e-mail contains PRIVILEGED AND CONFIDENTIAL INFORMATION intended solely for the use of the addressee(s). If you are not the intended recipient, please notify the sender by e-mail and delete the original message. Further, you are not to copy, disclose, or distribute this e-mail or its contents to any other person and any such actions that are unlawful. This e-mail may contain viruses. Ocimum Biosolutions has taken every reasonable precaution to minimize this risk, but is not liable for any damage you may sustain as a result of any virus in this e-mail. You should carry out your own virus checks before opening the e-mail or attachment.
The information contained in this email and any attachments is confidential and may be subject to copyright or other intellectual property protection. If you are not the intended recipient, you are not authorized to use or disclose this information, and we request that you notify us by reply mail or telephone and delete the original message from your mail system.
OCIMUMBIO SOLUTIONS (P) LTD