On Nov 3, 2010, at 17:24, Ry4an Brase <ry4an+galaxy(a)msi.umn.edu> wrote:
On Wed, Nov 03, 2010 at 05:19:03PM -0400, David Hoover wrote:
> I'm trying to enable the EMBOSS tools, and Galaxy is complaining it
> can't find the executables. Our local installation of EMBOSS is in a
> non-standard location (/usr/local/emboss/bin). I tried setting the
> $PATH variable in ~/.bashrc_profile and ~/.profile, but this had no
> effect. Where can I add the path to the EMBOSS tools so that Galaxy
> can find them?
I set ours directly in run.sh. Make sure you use 'export' so it alters
If using a cluster, however, it has to be set up in the user's shell startup files, or
~/.sge_request for SGE.
Ry4an Brase 612-626-6575
Software Developer Application Development
University of Minnesota Supercomputing Institute http://www.msi.umn.edu
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