Hi Brian,
This error is most likely caused by missing HDF libraries and the python Tables module.
You should be able to get the exact error of the conversion by looking at the failed
conversion history item (its hidden by default; under history options, click 'show
hidden datasets'). Please let us know if we can provide further assistance.
I would like to point out that using a local Galaxy installation with GeneTrack requires a
local installation of the GeneTrack server.
Thanks for using Galaxy,
Dan
On Jun 28, 2011, at 9:44 AM, Lewis, Brian Andrew wrote:
I’m seeing the following error in the log when clicking on the “View
in GeneTrack” link for a specific dataset:
Error - <type 'exceptions.Exception'>: A data display parameter is in the
error state: genetrack_file
URL:
http://localhost:8081/galaxy/display_application/cbbbf59e8f08c98c/genetra...
File
'/usr/local/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
line 143 in __call__
app_iter = self.application(environ, start_response)
File '/usr/local/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line
80 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
return self.application(environ, start_response)
File '/usr/local/galaxy-dist/lib/galaxy/web/framework/base.py', line 145 in
__call__
body = method( trans, **kwargs )
File '/usr/local/galaxy-dist/lib/galaxy/web/controllers/dataset.py', line 607 in
display_application
display_link = display_app.get_link( link_name, data, dataset_hash, user_hash, trans )
File
'/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py',
line 176 in get_link
return PopulatedDisplayApplicationLink( self.links[ link_name ], data, dataset_hash,
user_hash, trans )
File
'/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py',
line 116 in __init__
self.ready, self.parameters = self.link.build_parameter_dict( self.data,
self.dataset_hash, self.user_hash, trans )
File
'/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py',
line 57 in build_parameter_dict
if param.ready( other_values ):
File
'/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/parameters.py',
line 120 in ready
raise Exception( 'A data display parameter is in the error state: %s' % (
self.name ) )
Exception: A data display parameter is in the error state: genetrack_file
This is happening on a local instance of Galaxy, which has been updated to the most
recent revision. Before updating The specific data came from the UCSC table browser.
~ Brian
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