Hi Brian,
This error is most likely caused by missing HDF libraries and the python Tables module. You should be able to get the exact error of the conversion by looking at the failed conversion history item (its hidden by default; under history options, click 'show hidden datasets'). Please let us know if we can provide further assistance.
I would like to point out that using a local Galaxy installation with GeneTrack requires a local installation of the GeneTrack server.
Thanks for using Galaxy,
Dan
On Jun 28, 2011, at 9:44 AM, Lewis, Brian Andrew wrote:
I’m seeing the following error in the log when clicking on the “View in GeneTrack” link for a specific dataset:
Error - <type 'exceptions.Exception'>: A data display parameter is in the error state: genetrack_file URL: http://localhost:8081/galaxy/display_application/cbbbf59e8f08c98c/genetrack_... File '/usr/local/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__ app_iter = self.application(environ, start_response) File '/usr/local/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/usr/local/galaxy-dist/lib/galaxy/web/framework/base.py', line 145 in __call__ body = method( trans, **kwargs ) File '/usr/local/galaxy-dist/lib/galaxy/web/controllers/dataset.py', line 607 in display_application display_link = display_app.get_link( link_name, data, dataset_hash, user_hash, trans ) File '/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py', line 176 in get_link return PopulatedDisplayApplicationLink( self.links[ link_name ], data, dataset_hash, user_hash, trans ) File '/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py', line 116 in __init__ self.ready, self.parameters = self.link.build_parameter_dict( self.data, self.dataset_hash, self.user_hash, trans ) File '/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/application.py', line 57 in build_parameter_dict if param.ready( other_values ): File '/usr/local/galaxy-dist/lib/galaxy/datatypes/display_applications/parameters.py', line 120 in ready raise Exception( 'A data display parameter is in the error state: %s' % ( self.name ) ) Exception: A data display parameter is in the error state: genetrack_file
This is happening on a local instance of Galaxy, which has been updated to the most recent revision. Before updating The specific data came from the UCSC table browser.
~ Brian ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: