I don't have any advise from the BLAST DB side, but I would
expect the same solution to work with any *.loc file and the
file system it points at.
On Mon, May 20, 2019 at 10:50 AM Schäfer, Richard
> I want to integrate a Docker container as a tool in Galaxy. This works great.
> I need the forward a Volume to the container (at least that how it works outside of
> In particular, this would be the BLAST database.
> This means, I would want to share the location specified in blastdb.loc and forward
it to the
> container. Is there a way to do this?
> I see that there is an option to expose volumes to containers by specifying it in the
> However, I guess this will then be done for all containers? And how do I integrate
blastdb.loc in that command?
> For that, my tool config looks like this:
> <param name="database" type="select" display="radio"
> <options from_file="blastdb.loc">
> <column name="name" index="1"/>
> <column name="value" index="2"/>
> I simply want to access the path inside of the container and therefore shared it with
> Thanks for any help
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