You can add genomes in this file: $GALAXYROOT/tool-data/shared/ucsc/builds.txt Note that without related files (e.g. genome sequence, indices for mapping), the build information isn't very useful. However, with an entry in this file, you can link it to other resources when they become available via .loc files: http://wiki.galaxyproject.org/Admin/Data%20Integration Good luck, J. On May 6, 2013, at 11:53 AM, Lee Katz wrote:

Hi, I am wondering what I can do to add more genomes to this list (hopefully this image will make it through the mailing list). I am importing fastq files from a MiSeq run. We are using a modified version of Galaxy called Tron.

Everything I see on the wiki is about adding custom reference genome assemblies, but I don't understand what to do about adding a species without the reference assembly. Without the correct species, I am forced to use the option "unspecified (?)"

Thanks for your help.

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-- Lee Katz, Ph.D. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

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