On Fri, Aug 5, 2016 at 11:20 AM, Katherine Beaulieu < katherine.beaulieu014@gmail.com> wrote:

Thats perfect thanks so much!:)

On Fri, Aug 5, 2016 at 11:18 AM, Dannon Baker <dannon.baker@gmail.com> wrote:

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Got it, misunderstood your interest. You want this, see the fill_template usage in this method: https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/tools/evaluation...

On Fri, Aug 5, 2016 at 11:10 AM Katherine Beaulieu < katherine.beaulieu014@gmail.com> wrote:

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Hi Dannon, This is sort of what I'm looking for. I'm looking for the place where cheetah variables get replaced with input parameter values. I think this may be in another file?

On Fri, Aug 5, 2016 at 10:57 AM, Dannon Baker <dannon.baker@gmail.com> wrote:

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Check out https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/jobs/command_fac...

Let me know if this wasn't what you were looking for.

-Dannon

On Fri, Aug 5, 2016 at 10:49 AM Katherine Beaulieu < katherine.beaulieu014@gmail.com> wrote:

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Within the galaxy app itself, does anyone know where the command line is being built? Thanks! Katherine ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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