Re: [galaxy-dev] how to create users through Galaxy API?
Hi, you specify username, password and email in the body (payload) of the POST as Key:Value pairs. Code from the API method: ( https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal...) username = payload[ 'username' ] email = payload[ 'email' ] password = payload[ 'password' ] There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry). M. On Sun, Dec 29, 2013 at 11:22 PM, xlwang <xlwang_0903@163.com> wrote:
hi, I still have some confusion. post /api/users , when i use postman, it seems like this:
No other parameters? How to confirm the new user's information?Such as user name, password. Can you give me a example please?Thank you!
At 2013-12-30 06:04:15,"Martin Čech" <marten@bx.psu.edu> wrote:
Hello,
to create a user through API you send a POST request to /api/users
More information about User API here:
https://galaxy-central.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.a...
Martin
On Fri, Dec 27, 2013 at 5:11 AM, xlwang <xlwang_0903@163.com> wrote:
hello, I want to create users through Galaxy API.For example, I can get users information through url like this(use postman): http://localhost:8080/api/users?key=my_key But how to create a user?
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Hi Martin, I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration. The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar: https://wiki.galaxyproject.org/Admin/API Where is the official API documentation now? Thanks, Peter On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: ( https://galaxy-central. readthedocs.org/en/latest/_modules/galaxy/webapps/galaxy/api/users.html# UserAPIController.create )
username = payload[ 'username' ] email = payload[ 'email' ] password = payload[ 'password' ]
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
Hi Peter I guess it is here: https://docs.galaxyproject.org/en/master/api_doc.html Regards, Hans-Rudolf On 08/29/2016 05:27 PM, Peter Cock wrote:
Hi Martin,
I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration.
The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar:
https://wiki.galaxyproject.org/Admin/API
Where is the official API documentation now?
Thanks,
Peter
On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu <mailto:marten@bx.psu.edu>> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: ( https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal... <https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/galaxy/api/users.html#UserAPIController.create> )
username=payload['username']email=payload['email']password=payload['password']
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
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Thanks Hans-Rudolf, Yes - you are right. The wiki does link there but it wasn't obvious to me. Reading the UserAPIController link source code suggests as long as I am authenticated as a Galaxy Admin, I could use this to create new user accounts: https://docs.galaxyproject.org/en/master/_modules/galaxy/webapps/galaxy/api/... Thank looks very promising... Peter On Mon, Aug 29, 2016 at 4:36 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi Peter
I guess it is here:
https://docs.galaxyproject.org/en/master/api_doc.html
Regards, Hans-Rudolf
On 08/29/2016 05:27 PM, Peter Cock wrote:
Hi Martin,
I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration.
The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar:
https://wiki.galaxyproject.org/Admin/API
Where is the official API documentation now?
Thanks,
Peter
On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu <mailto:marten@bx.psu.edu>> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: (
https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal...
username=payload['username']email=payload['email']password=payload['password']
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Peter, why not use BioBlend? https://bioblend.readthedocs.io/en/latest/api_docs/galaxy/all.html#module-bi... Cheers, Nicola ---- Peter Cock ha scritto ----
Thanks Hans-Rudolf,
Yes - you are right. The wiki does link there but it wasn't obvious to me. Reading the UserAPIController link source code suggests as long as I am authenticated as a Galaxy Admin, I could use this to create new user accounts:
https://docs.galaxyproject.org/en/master/_modules/galaxy/webapps/galaxy/api/...
Thank looks very promising...
Peter
On Mon, Aug 29, 2016 at 4:36 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi Peter
I guess it is here:
https://docs.galaxyproject.org/en/master/api_doc.html
Regards, Hans-Rudolf
On 08/29/2016 05:27 PM, Peter Cock wrote:
Hi Martin,
I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration.
The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar:
https://wiki.galaxyproject.org/Admin/API
Where is the official API documentation now?
Thanks,
Peter
On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu <mailto:marten@bx.psu.edu>> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: (
https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal...
username=payload['username']email=payload['email']password=payload['password']
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hello Peter Following on from Nicola's suggestion: a while ago I had a go at writing some command line tools using Bioblend to try and do some of my Galaxy admin tasks via the API, including creating new user accounts so I'd also recommend this route as much much easier than attempting to interact with the API directly. The tools I wrote are here if you'd like to look at some an example of using Bioblend for this, to get you started: https://github.com/pjbriggs/nebulizer/blob/master/nebulizer/users.py As long as the user that the API key belongs to is an admin user (or if you're using a master API key) this works fine. HTH Best wishes Peter On 29/08/16 17:37, Nicola Soranzo wrote:
Hi Peter, why not use BioBlend?
https://bioblend.readthedocs.io/en/latest/api_docs/galaxy/all.html#module-bi...
Cheers, Nicola
---- Peter Cock ha scritto ----
Thanks Hans-Rudolf,
Yes - you are right. The wiki does link there but it wasn't obvious to me. Reading the UserAPIController link source code suggests as long as I am authenticated as a Galaxy Admin, I could use this to create new user accounts:
https://docs.galaxyproject.org/en/master/_modules/galaxy/webapps/galaxy/api/...
Thank looks very promising...
Peter
On Mon, Aug 29, 2016 at 4:36 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi Peter
I guess it is here:
https://docs.galaxyproject.org/en/master/api_doc.html
Regards, Hans-Rudolf
On 08/29/2016 05:27 PM, Peter Cock wrote:
Hi Martin,
I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration.
The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar:
https://wiki.galaxyproject.org/Admin/API
Where is the official API documentation now?
Thanks,
Peter
On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu <mailto:marten@bx.psu.edu>> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: (
https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal...
username=payload['username']email=payload['email']password=payload['password']
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482
Thanks Nicola & Peter B., I was hoping we could script new-user creation like this, and that someone else had already done this with the Galaxy API (and Bioblend). This looks great! Thank you both, Peter C. On Tue, Aug 30, 2016 at 10:43 AM, Peter Briggs <peter.briggs@manchester.ac.uk> wrote:
Hello Peter
Following on from Nicola's suggestion: a while ago I had a go at writing some command line tools using Bioblend to try and do some of my Galaxy admin tasks via the API, including creating new user accounts so I'd also recommend this route as much much easier than attempting to interact with the API directly.
The tools I wrote are here if you'd like to look at some an example of using Bioblend for this, to get you started:
https://github.com/pjbriggs/nebulizer/blob/master/nebulizer/users.py
As long as the user that the API key belongs to is an admin user (or if you're using a master API key) this works fine.
HTH
Best wishes
Peter
On 29/08/16 17:37, Nicola Soranzo wrote:
Hi Peter, why not use BioBlend?
https://bioblend.readthedocs.io/en/latest/api_docs/galaxy/all.html#module-bi...
Cheers, Nicola
---- Peter Cock ha scritto ----
Thanks Hans-Rudolf,
Yes - you are right. The wiki does link there but it wasn't obvious to me. Reading the UserAPIController link source code suggests as long as I am authenticated as a Galaxy Admin, I could use this to create new user accounts:
https://docs.galaxyproject.org/en/master/_modules/galaxy/webapps/galaxy/api/...
Thank looks very promising...
Peter
On Mon, Aug 29, 2016 at 4:36 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi Peter
I guess it is here:
https://docs.galaxyproject.org/en/master/api_doc.html
Regards, Hans-Rudolf
On 08/29/2016 05:27 PM, Peter Cock wrote:
Hi Martin,
I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration.
The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar:
https://wiki.galaxyproject.org/Admin/API
Where is the official API documentation now?
Thanks,
Peter
On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu <mailto:marten@bx.psu.edu>> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: (
https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal...
username=payload['username']email=payload['email']password=payload['password']
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi, and here a script used by the Galaxy Docker project: https://github.com/bgruening/docker-galaxy-stable/blob/master/galaxy/setup_p... Cheers, Bjoern Am 30.08.2016 um 11:56 schrieb Peter Cock:
Thanks Nicola & Peter B.,
I was hoping we could script new-user creation like this, and that someone else had already done this with the Galaxy API (and Bioblend). This looks great!
Thank you both,
Peter C.
On Tue, Aug 30, 2016 at 10:43 AM, Peter Briggs <peter.briggs@manchester.ac.uk> wrote:
Hello Peter
Following on from Nicola's suggestion: a while ago I had a go at writing some command line tools using Bioblend to try and do some of my Galaxy admin tasks via the API, including creating new user accounts so I'd also recommend this route as much much easier than attempting to interact with the API directly.
The tools I wrote are here if you'd like to look at some an example of using Bioblend for this, to get you started:
https://github.com/pjbriggs/nebulizer/blob/master/nebulizer/users.py
As long as the user that the API key belongs to is an admin user (or if you're using a master API key) this works fine.
HTH
Best wishes
Peter
On 29/08/16 17:37, Nicola Soranzo wrote:
Hi Peter, why not use BioBlend?
https://bioblend.readthedocs.io/en/latest/api_docs/galaxy/all.html#module-bi...
Cheers, Nicola
---- Peter Cock ha scritto ----
Thanks Hans-Rudolf,
Yes - you are right. The wiki does link there but it wasn't obvious to me. Reading the UserAPIController link source code suggests as long as I am authenticated as a Galaxy Admin, I could use this to create new user accounts:
https://docs.galaxyproject.org/en/master/_modules/galaxy/webapps/galaxy/api/...
Thank looks very promising...
Peter
On Mon, Aug 29, 2016 at 4:36 PM, Hans-Rudolf Hotz <hrh@fmi.ch> wrote:
Hi Peter
I guess it is here:
https://docs.galaxyproject.org/en/master/api_doc.html
Regards, Hans-Rudolf
On 08/29/2016 05:27 PM, Peter Cock wrote:
Hi Martin,
I'd like to look into creating new users via the API (where we can control the email address and username format for integration with our cluster), and have the web-interface forbid users from self-registration.
The read-the-docs site you mentioned in this old email (below) doesn't exist anymore, and the API wiki page doesn't seem to link to something similar:
https://wiki.galaxyproject.org/Admin/API
Where is the official API documentation now?
Thanks,
Peter
On Mon, Dec 30, 2013 at 4:34 AM, Martin Čech <marten@bx.psu.edu <mailto:marten@bx.psu.edu>> wrote:
Hi,
you specify username, password and email in the body (payload) of the POST as Key:Value pairs.
Code from the API method: (
https://galaxy-central.readthedocs.org/en/latest/_modules/galaxy/webapps/gal...
username=payload['username']email=payload['email']password=payload['password']
There are also other conditions that need to be fulfilled (e.g. user creation has to be turned on in the configuration) - you will find these when you look at the source code of the method (because the documentation is not perfect yet, sorry).
M.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (6)
-
Björn Grüning -
Hans-Rudolf Hotz -
Martin Čech -
Nicola Soranzo -
Peter Briggs -
Peter Cock