Hi Chris,

Take a look at this file : lib/galaxy/jobs/runners/drmaa.py in your galaxy directory.

You can export a path for binaries here. For example : export PATH=$PATH:/opt/bin/ before export PYTHONPATH

Moreover, do not forget other path values in your service script or in your galaxy user profile.

Hope this help.

2011/8/23 Roman Valls brainstorm@nopcode.org

Did you adjust the SGE_ROOT environment variable to point to the libdrmaa for SGE (probably /opt/sge_62u5_gr/bin/lx24-amd64) ?

This is of course just a guess, could you please provide some error messages/logs ?

Cheers, Roman

On 2011-08-23 10:20, Chris Cole wrote:

...

BUMP

Does anyone have any idea on this? Our Galaxy is currently out of action until this is sorted. Thanks,

Chris

On 22/08/11 10:08, Chris Cole wrote:

...

Hi,

Following a recent update to our SGE, DRMAA is failing to load in galaxy. The reason being that the path has changed. How do I change the path for galaxy to find the libdrmaa module? Cheers,

Chris

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