ERROR on History export
Hello, I'd am trying to export histories to upload to another galaxy instance. For some histories, it works fine. However, for others, I get an error. When I turn on debug, I get the error pasted below. Any thoughts on what is the cause of "object has no attribute 'hid'"? Thanks! Todd Server Error Module paste.exceptions.errormiddleware:*143* in |__call__| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>app_iter *=* self*.*application*(*environ*,* start_response*)*| Module paste.debug.prints:*98* in |__call__| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>environ*,* self*.*app*)*| Module paste.wsgilib:*539* in |intercept_output| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>app_iter *=* application*(*environ*,* replacement_start_response*)*| Module paste.recursive:*80* in |__call__| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>*return* self*.*application*(*environ*,* start_response*)*| Module paste.httpexceptions:*632* in |__call__| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>*return* self*.*application*(*environ*,* start_response*)*| Module galaxy.web.framework.base:*145* in |__call__| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>body *=* method*(* trans*,* ****kwargs *)*| Module galaxy.web.controllers.history:*591* in |export_archive| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>history_exp_tool*.*execute*(* trans*,* incoming *=* params*,* set_output_hid *=* True *)*| Module galaxy.tools:*1276* in |execute| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>*return* self*.*tool_action*.*execute*(* self*,* trans*,* incoming*=*incoming*,* set_output_hid*=*set_output_hid*,* history*=*history*,* ****kwargs *)*| Module galaxy.tools.actions.history_imp_exp:*103* in |execute| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>include_deleted*=*incoming*[* 'include_deleted' *]* *)*| Module galaxy.tools.imp_exp:*419* in |setup_job| |>> <http://knot.cnsi.ucsb.edu:8080/history/export_archive#>input_datasets *=* *[* assoc*.*dataset*.*hid *for* assoc *in* job*.*input_datasets *]*| *AttributeError: 'NoneType' object has no attribute 'hid'* -- *************************************** Todd Oakley, Professor Ecology Evolution and Marine Biology University of California, Santa Barbara Santa Barbara, CA 93106 USA ***************************************
Hi Todd, History export is a beta feature and hasn't been fully tested yet. We'll look into this, but it's difficult to diagnose a bug on a local instance. Can you reproduce on either our main or test server? Thanks, J. On Apr 25, 2012, at 8:08 PM, Todd Oakley wrote:
Hello, I'd am trying to export histories to upload to another galaxy instance.
For some histories, it works fine. However, for others, I get an error. When I turn on debug, I get the error pasted below. Any thoughts on what is the cause of "object has no attribute 'hid'"?
Thanks! Todd
Server Error
Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:145 in __call__ body = method( trans, **kwargs ) Module galaxy.web.controllers.history:591 in export_archive history_exp_tool.execute( trans, incoming = params, set_output_hid = True ) Module galaxy.tools:1276 in execute return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions.history_imp_exp:103 in execute include_deleted=incoming[ 'include_deleted' ] ) Module galaxy.tools.imp_exp:419 in setup_job input_datasets = [ assoc.dataset.hid for assoc in job.input_datasets ] AttributeError: 'NoneType' object has no attribute 'hid' --
Todd Oakley, Professor Ecology Evolution and Marine Biology University of California, Santa Barbara Santa Barbara, CA 93106 USA ***************************************
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participants (2)
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Jeremy Goecks -
Todd Oakley