Vizualisation broken after updating
Hi all, In general, updating Galaxy works very smooth. But I got some strange unresolved merges after the last update (files affecting galaxy-dist/static/scripts/packed/viz) After resolving the conflicts (to the correct latest files), the visualisation component is not working anymore. Symptoms: I see the list of saved visualisations, but clicking on a visualisation just returns an empty screen. Creating a new visualisation: the box to name the visualisation appears, but after filling in and proceeding, again a blank screen with just the Galaxy Bar on top. Any help how to fix this? Thanks, Joachim -- Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
In general, updating Galaxy works very smooth. But I got some strange unresolved merges after the last update (files affecting galaxy-dist/static/scripts/packed/viz) After resolving the conflicts (to the correct latest files), the visualisation component is not working anymore.
What version are you updating to? Are you using the packed scripts via a proxy server?
Symptoms: I see the list of saved visualisations, but clicking on a visualisation just returns an empty screen. Creating a new visualisation: the box to name the visualisation appears, but after filling in and proceeding, again a blank screen with just the Galaxy Bar on top.
First step is always to clear your cache. After that, what are the JavaScript errors that you're seeing? Thanks, J.
Hi, I had cleared my cache, and switched on error reporting ... Flash of insight: I had this issue before. :-s I digged this thread up: http://dev.list.galaxyproject.org/Trackster-error-after-upgrade-td4656986.ht... Repacking the scripts fixed it for me: ~/galaxy-dist/static/scripts/python/pack_scripts.py I have only a faint clue why the packing did not work: I had manually corrected some scripts (in static/scripts/viz/trackster), after merging failed during updating. Since those java scripts had been reflowed to have all the code on one line (...), the merging obviously did not work out well... I forgot to repack the scripts after this manual intervention. Thanks! Joachim Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 01/10/2013 02:56 PM, Jeremy Goecks wrote:
In general, updating Galaxy works very smooth. But I got some strange unresolved merges after the last update (files affecting galaxy-dist/static/scripts/packed/viz) After resolving the conflicts (to the correct latest files), the visualisation component is not working anymore. What version are you updating to?
Are you using the packed scripts via a proxy server?
Symptoms: I see the list of saved visualisations, but clicking on a visualisation just returns an empty screen. Creating a new visualisation: the box to name the visualisation appears, but after filling in and proceeding, again a blank screen with just the Galaxy Bar on top. First step is always to clear your cache. After that, what are the JavaScript errors that you're seeing?
Thanks, J.
I have only a faint clue why the packing did not work: I had manually corrected some scripts (in static/scripts/viz/trackster), after merging failed during updating.
I'm curious about what changes/corrections you made to Galaxy's scripts. Would you be willing to share them?
Since those java scripts had been reflowed to have all the code on one line (...), the merging obviously did not work out well...
In general, packing reduces the size of scripts so that they load more quickly. As you noted, merging packed scripts does not work well at all since they are all a single line. When you make changes to any Galaxy JavaScript files, you'll need to repack the script(s) yourself. Best, J.
Hi Jeremy, I did not do any change/corrections! That's why I was puzzled that the hg merging did not work... The files had just some '<<<<<<<<<<<<< local' lines that I needed to remove... Sorry that I could not be more helpful on this occasion. Thanks, Joachim Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 01/14/2013 02:47 PM, Jeremy Goecks wrote:
I have only a faint clue why the packing did not work: I had manually corrected some scripts (in static/scripts/viz/trackster), after merging failed during updating. I'm curious about what changes/corrections you made to Galaxy's scripts. Would you be willing to share them?
Since those java scripts had been reflowed to have all the code on one line (...), the merging obviously did not work out well... In general, packing reduces the size of scripts so that they load more quickly. As you noted, merging packed scripts does not work well at all since they are all a single line. When you make changes to any Galaxy JavaScript files, you'll need to repack the script(s) yourself.
Best, J.
participants (2)
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Jeremy Goecks -
Joachim Jacob