Easier integration of fastx-toolkit
Hello all, I'm trying to make the integration of the fastx-tools easier for new installations of galaxy, I'd appreciate any comments or suggestions you might have. Steps so far: 1. new version that compiles cleanly on Ubuntu,CentOS,OpenSolaris,FreeBSD 2. detailed compilation instructions for each operating system 3. pre-compiled binaries for Linux, FreeBSD, OpenSolaris The above are available here: http://cancan.cshl.edu/labmembers/gordon/fastx_toolkit/download_new.html Remains to be done: 1. Do the same for MacOS-X 2. Update the XML files, probably remove "zcat" entirely. 3. rewrite the instructions for "galaxy integration" - this is not required any more, because the XML files are now part of the galaxy repository. Please let me know if you think of anything else. thanks, -gordon
Assaf: Thanks for doing this, we really need to work cleanly. One thing = remember, that our standard is offset 33. Thanks!!! a. On Dec 2, 2009, at 10:06 PM, Assaf Gordon wrote:
Hello all,
I'm trying to make the integration of the fastx-tools easier for new installations of galaxy, I'd appreciate any comments or suggestions you might have.
Steps so far: 1. new version that compiles cleanly on Ubuntu,CentOS,OpenSolaris,FreeBSD 2. detailed compilation instructions for each operating system 3. pre-compiled binaries for Linux, FreeBSD, OpenSolaris
The above are available here: http://cancan.cshl.edu/labmembers/gordon/fastx_toolkit/download_new.html
Remains to be done: 1. Do the same for MacOS-X 2. Update the XML files, probably remove "zcat" entirely. 3. rewrite the instructions for "galaxy integration" - this is not required any more, because the XML files are now part of the galaxy repository.
Please let me know if you think of anything else.
thanks, -gordon _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
Anton Nekrutenko http://nekrut.bx.psu.edu http://galaxyproject.org
Hi Gordon, Thanks very much for this. I can say that having pre-compiled binaries (amd64) makes life much easier. Cheers, Chris On 03/12/09 03:06, Assaf Gordon wrote:
Hello all,
I'm trying to make the integration of the fastx-tools easier for new installations of galaxy, I'd appreciate any comments or suggestions you might have.
Steps so far: 1. new version that compiles cleanly on Ubuntu,CentOS,OpenSolaris,FreeBSD 2. detailed compilation instructions for each operating system 3. pre-compiled binaries for Linux, FreeBSD, OpenSolaris
The above are available here: http://cancan.cshl.edu/labmembers/gordon/fastx_toolkit/download_new.html
Remains to be done: 1. Do the same for MacOS-X 2. Update the XML files, probably remove "zcat" entirely. 3. rewrite the instructions for "galaxy integration" - this is not required any more, because the XML files are now part of the galaxy repository.
Please let me know if you think of anything else.
thanks, -gordon
participants (3)
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Anton Nekrutenko -
Assaf Gordon -
Chris Cole