Hi, We got an error when we used API to see a quota detail, we get the following traceback: 157.99.60.167 - - [08/Mar/2016:10:13:58 +0200] "GET /api/quotas HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:44.0) Gecko/20100101 Firefox/44.0" galaxy.web.framework.decorators ERROR 2016-03-08 10:14:10,273 Uncaught exception in exposed API method: Traceback (most recent call last): File ".../lib/galaxy/web/framework/decorators.py", line 142, in decorator rval = dumps( rval, indent=4, sort_keys=True ) File ".../lib/galaxy/util/json.py", line 65, in safe_dumps dumped = json.dumps( *args, allow_nan=False, **kwargs ) File "/usr/lib64/python2.6/json/__init__.py", line 237, in dumps **kw).encode(obj) File "/usr/lib64/python2.6/json/encoder.py", line 367, in encode chunks = list(self.iterencode(o)) File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 306, in _iterencode for chunk in self._iterencode_list(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 204, in _iterencode_list for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 317, in _iterencode for chunk in self._iterencode_default(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 323, in _iterencode_default newobj = self.default(o) File "/usr/lib64/python2.6/json/encoder.py", line 344, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: Decimal('856488698767') is not JSON serializable json can't serialize Decimal object. I tested it with simplejson and it works. An other solution is to convert the Decimal object to a float before the dumps. Thanks a lot for your help Best regards, -- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr <mailto:fabien.mareuil@pasteur.fr> | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France
Hi Fabien, I'm having trouble reproducing this error on my side. In the trace it looks like the error is being thrown at the collection view (/api/quotas) and not the detail view (/api/quotas/f597429621d6eb2b or the like). Is that true? Can you show me the exact configuration of this quota in the admin panel? On Tue, Mar 8, 2016 at 8:10 AM, Fabien Mareuil <fmareuil@pasteur.fr> wrote:
Hi,
We got an error when we used API to see a quota detail, we get the following traceback:
157.99.60.167 - - [08/Mar/2016:10:13:58 +0200] "GET /api/quotas HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:44.0) Gecko/20100101 Firefox/44.0" galaxy.web.framework.decorators ERROR 2016-03-08 10:14:10,273 Uncaught exception in exposed API method: Traceback (most recent call last): File ".../lib/galaxy/web/framework/decorators.py", line 142, in decorator rval = dumps( rval, indent=4, sort_keys=True ) File ".../lib/galaxy/util/json.py", line 65, in safe_dumps dumped = json.dumps( *args, allow_nan=False, **kwargs ) File "/usr/lib64/python2.6/json/__init__.py", line 237, in dumps **kw).encode(obj) File "/usr/lib64/python2.6/json/encoder.py", line 367, in encode chunks = list(self.iterencode(o)) File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 306, in _iterencode for chunk in self._iterencode_list(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 204, in _iterencode_list for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 317, in _iterencode for chunk in self._iterencode_default(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 323, in _iterencode_default newobj = self.default(o) File "/usr/lib64/python2.6/json/encoder.py", line 344, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: Decimal('856488698767') is not JSON serializable
json can't serialize Decimal object. I tested it with simplejson and it works. An other solution is to convert the Decimal object to a float before the dumps.
Thanks a lot for your help Best regards,
-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France
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Hi Dannon, I got this error with a detail view (/api/quotas/f597429621d6eb2b) when the quota has associated users with a disk usage different of 0, total_disk_usage in the user dictionary is a Decimal object and is not serializable. I worked on it this afternoon, it's possible to correct it just by adding the key 'total_disk_usage' in the value_mapper of the show method of QuotaAPIController class like the show method of UserAPIController class. I join a patch for the quota.py file with this email I can propose a pull request if you want. Best, -- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr <mailto:fabien.mareuil@pasteur.fr> | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France Le 08/03/2016 16:24, Dannon Baker a écrit :
Hi Fabien,
I'm having trouble reproducing this error on my side. In the trace it looks like the error is being thrown at the collection view (/api/quotas) and not the detail view (/api/quotas/f597429621d6eb2b or the like). Is that true?
Can you show me the exact configuration of this quota in the admin panel?
On Tue, Mar 8, 2016 at 8:10 AM, Fabien Mareuil <fmareuil@pasteur.fr <mailto:fmareuil@pasteur.fr>> wrote:
Hi,
We got an error when we used API to see a quota detail, we get the following traceback:
157.99.60.167 - - [08/Mar/2016:10:13:58 +0200] "GET /api/quotas HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:44.0) Gecko/20100101 Firefox/44.0" galaxy.web.framework.decorators ERROR 2016-03-08 10:14:10,273 Uncaught exception in exposed API method: Traceback (most recent call last): File ".../lib/galaxy/web/framework/decorators.py", line 142, in decorator rval = dumps( rval, indent=4, sort_keys=True ) File ".../lib/galaxy/util/json.py", line 65, in safe_dumps dumped = json.dumps( *args, allow_nan=False, **kwargs ) File "/usr/lib64/python2.6/json/__init__.py", line 237, in dumps **kw).encode(obj) File "/usr/lib64/python2.6/json/encoder.py", line 367, in encode chunks = list(self.iterencode(o)) File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 306, in _iterencode for chunk in self._iterencode_list(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 204, in _iterencode_list for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 317, in _iterencode for chunk in self._iterencode_default(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 323, in _iterencode_default newobj = self.default(o) File "/usr/lib64/python2.6/json/encoder.py", line 344, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: Decimal('856488698767') is not JSON serializable
json can't serialize Decimal object. I tested it with simplejson and it works. An other solution is to convert the Decimal object to a float before the dumps.
Thanks a lot for your help Best regards,
-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr <mailto:fabien.mareuil@pasteur.fr> | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France
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Fabien, Thanks for the patch. I've opened a PR applying it in https://github.com/galaxyproject/galaxy/pull/1898. I'm thinking we might want to eventually refactor a little and add more general support for Decimal serialization, perhaps in the 'safe_dumps' machinery in galaxy.util.json, but this looks good to me for now. On Tue, Mar 8, 2016 at 12:42 PM, Fabien Mareuil <fmareuil@pasteur.fr> wrote:
Hi Dannon,
I got this error with a detail view (/api/quotas/f597429621d6eb2b) when the quota has associated users with a disk usage different of 0, total_disk_usage in the user dictionary is a Decimal object and is not serializable. I worked on it this afternoon, it's possible to correct it just by adding the key 'total_disk_usage' in the value_mapper of the show method of QuotaAPIController class like the show method of UserAPIController class. I join a patch for the quota.py file with this email I can propose a pull request if you want.
Best,
-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France
Le 08/03/2016 16:24, Dannon Baker a écrit :
Hi Fabien,
I'm having trouble reproducing this error on my side. In the trace it looks like the error is being thrown at the collection view (/api/quotas) and not the detail view (/api/quotas/f597429621d6eb2b or the like). Is that true?
Can you show me the exact configuration of this quota in the admin panel?
On Tue, Mar 8, 2016 at 8:10 AM, Fabien Mareuil <fmareuil@pasteur.fr> wrote:
Hi,
We got an error when we used API to see a quota detail, we get the following traceback:
157.99.60.167 - - [08/Mar/2016:10:13:58 +0200] "GET /api/quotas HTTP/1.1" 200 - "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:44.0) Gecko/20100101 Firefox/44.0" galaxy.web.framework.decorators ERROR 2016-03-08 10:14:10,273 Uncaught exception in exposed API method: Traceback (most recent call last): File ".../lib/galaxy/web/framework/decorators.py", line 142, in decorator rval = dumps( rval, indent=4, sort_keys=True ) File ".../lib/galaxy/util/json.py", line 65, in safe_dumps dumped = json.dumps( *args, allow_nan=False, **kwargs ) File "/usr/lib64/python2.6/json/__init__.py", line 237, in dumps **kw).encode(obj) File "/usr/lib64/python2.6/json/encoder.py", line 367, in encode chunks = list(self.iterencode(o)) File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 306, in _iterencode for chunk in self._iterencode_list(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 204, in _iterencode_list for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 309, in _iterencode for chunk in self._iterencode_dict(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 275, in _iterencode_dict for chunk in self._iterencode(value, markers): File "/usr/lib64/python2.6/json/encoder.py", line 317, in _iterencode for chunk in self._iterencode_default(o, markers): File "/usr/lib64/python2.6/json/encoder.py", line 323, in _iterencode_default newobj = self.default(o) File "/usr/lib64/python2.6/json/encoder.py", line 344, in default raise TypeError(repr(o) + " is not JSON serializable") TypeError: Decimal('856488698767') is not JSON serializable
json can't serialize Decimal object. I tested it with simplejson and it works. An other solution is to convert the Decimal object to a float before the dumps.
Thanks a lot for your help Best regards,
-- Fabien Mareuil | Centre d'Informatique pour la Biologie fabien.mareuil@pasteur.fr | Institut Pasteur 25,28 rue du Docteur Roux 75015 Paris, France
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To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
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Dannon Baker -
Fabien Mareuil