I would like to avoid reinventing the wheel if possible, so I wonder if anyone has wrappers for Garli (https://www.nescent.org/wg_garli/Main_Page) and Tandem Repeats Finder (http://tandem.bu.edu/trf/trf.html) they could share.
Thanks,
Alex
Hello Alex,
Both of these tools are in the Tool Shed. An easy way to locate these (and to search for tools/wrappers related to Galaxy in general) is: http://galaxy.psu.edu/search/getgalaxy/
More about the Tool shed: http://wiki.g2.bx.psu.edu/Tool%20Shed
More about the searches: http://wiki.g2.bx.psu.edu/News/Custom%20Galaxy%20Search
Hopefully you have found these already, or this helps, or perhaps you are malex? In any case, I noticed this older thread didn't have a reply, the Tool Shed additions are newer (late Nov, early Dec), and this looked like a good opportunity share how the new searches can quickly answer questions like this.
Take care,
Jen Galaxy team
On 10/27/11 9:23 PM, Oleksandr Moskalenko wrote:
I would like to avoid reinventing the wheel if possible, so I wonder if anyone has wrappers for Garli (https://www.nescent.org/wg_garli/Main_Page) and Tandem Repeats Finder (http://tandem.bu.edu/trf/trf.html) they could share.
Thanks,
Alex
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On Feb 8, 2012, at 10:07 AM, Jennifer Jackson wrote:
Hello Alex,
Both of these tools are in the Tool Shed. An easy way to locate these (and to search for tools/wrappers related to Galaxy in general) is: http://galaxy.psu.edu/search/getgalaxy/
More about the Tool shed: http://wiki.g2.bx.psu.edu/Tool%20Shed
More about the searches: http://wiki.g2.bx.psu.edu/News/Custom%20Galaxy%20Search
Hopefully you have found these already, or this helps, or perhaps you are malex? In any case, I noticed this older thread didn't have a reply, the Tool Shed additions are newer (late Nov, early Dec), and this looked like a good opportunity share how the new searches can quickly answer questions like this.
Take care,
Jen Galaxy team
Hi Jennifer,
I am "malex". I ended up writing those wrappers and submitting them to the tool shed.
Regards,
Alex M. a.k.a malex :)
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