Issue, displaying or downloading data.
Good Morning, I have had the following issue reported to me by one of our users and I have confirmed the behaviour. Hi Mike, I'm looking at the new Galaxy at http://jic55666:8080/root and I have found a problem. If I import a dataset from the data libraries, then stuff runs OK. If I upload a dataset from a file I get the following problems. 1. I can view data preview in history item, but can't view data in main panel (by clicking on the eye) 2. Tools run on file-uploaded data execute OK and appear to produce output (again viewable in history item), but data can't be viewed in main panel. 3. Downloading any datasets created from file-uploaded dataset, result in an empty file. 4. If I upload a file to Galaxy and then save it back to disk, it's empty. Some further specifics on our install galaxy@jic55666:~/software/galaxy-central$ hg tip changeset: 6042:2469c53051ea tag: tip user: Daniel Blankenberg <dan@bx.psu.edu> date: Sun Sep 25 13:27:14 2011 -0400 summary: Some random lines tool tweaks. Thanks Michael. ----------------------------------------------------------------------------------------------------- Please note, that my email address is no longer givenname.surname@bbsrc.ac.uk. Please update your records to reflect my new email address of givenname.surname@nbi.ac.uk as shown on this email.
michael burrell (TOC) wrote:
Good Morning,
I have had the following issue reported to me by one of our users and I have confirmed the behaviour.
Hi Mike,
I'm looking at the new Galaxy at http://jic55666:8080/root and I have found a problem.
If I import a dataset from the data libraries, then stuff runs OK.
If I upload a dataset from a file I get the following problems.
1. I can view data preview in history item, but can't view data in main panel (by clicking on the eye) 2. Tools run on file-uploaded data execute OK and appear to produce output (again viewable in history item), but data can't be viewed in main panel.
3. Downloading any datasets created from file-uploaded dataset, result in an empty file.
4. If I upload a file to Galaxy and then save it back to disk, it's empty.
Some further specifics on our install
galaxy@jic55666:~/software/galaxy-central$ hg tip
changeset: 6042:2469c53051ea
tag: tip
user: Daniel Blankenberg <dan@bx.psu.edu>
date: Sun Sep 25 13:27:14 2011 -0400
summary: Some random lines tool tweaks.
Hi Michael, Have you set: use_debug = False use_interactive = False In your config? Thanks, --nate
Thanks
Michael.
----------------------------------------------------------------------------------------------------- Please note, that my email address is no longer givenname.surname@bbsrc.ac.uk. Please update your records to reflect my new email address of givenname.surname@nbi.ac.uk as shown on this email.
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participants (2)
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michael burrell (TOC) -
Nate Coraor