Hello, I just installed and updated a local instance of Galaxy on my mac. I then created a user and set the according username (email) as admin in the universe_wsgi.ini file. When I save and restart the server no admin panel appears. What am I doing wrong? Thank you very much for your help! Tobias
On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur <hohenauer@brain.riken.jp> wrote:
Hello,
I just installed and updated a local instance of Galaxy on my mac. I then created a user and set the according username (email) as admin in the universe_wsgi.ini file. When I save and restart the server no admin panel appears. What am I doing wrong? Thank you very much for your help! Tobias
Make sure you are logged in, and that the email address of your Galaxy account matches the universe_wsgi.ini setting exactly (case may be important). Also the setting used to have problems with extra white space (but I think that was fixed). Peter
That does not help. Actually, I tried to change random things in the universe_wsgi.ini, like setting the port to 8081, but none of the changes take effect when I restart the server. I am confused... ----- Original Message -----
From: Peter Cock <p.j.a.cock@googlemail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: galaxy-dev@lists.bx.psu.edu Date: 2013-04-07 23:28:31 Subject: Re: [galaxy-dev] How to be an admin?
On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur <hohenauer@brain.riken.jp> wrote:
Hello,
I just installed and updated a local instance of Galaxy on my mac. I then created a user and set the according username (email) as admin in the universe_wsgi.ini file. When I save and restart the server no admin panel appears. What am I doing wrong? Thank you very much for your help! Tobias
Make sure you are logged in, and that the email address of your Galaxy account matches the universe_wsgi.ini setting exactly (case may be important). Also the setting used to have problems with extra white space (but I think that was fixed).
Peter
How is it that you're restarting the server? It might be useful to check galaxy's log to see what's going on -- this would be paster.log in your galaxy directory or perhaps the foreground of the terminal you're executing galaxy from. -Dannon On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur <hohenauer@brain.riken.jp>wrote:
From: Peter Cock <p.j.a.cock@googlemail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: galaxy-dev@lists.bx.psu.edu Date: 2013-04-07 23:28:31 Subject: Re: [galaxy-dev] How to be an admin?
On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur <hohenauer@brain.riken.jp> wrote:
Hello,
I just installed and updated a local instance of Galaxy on my mac. I
created a user and set the according username (email) as admin in the universe_wsgi.ini file. When I save and restart the server no admin
That does not help. Actually, I tried to change random things in the universe_wsgi.ini, like setting the port to 8081, but none of the changes take effect when I restart the server. I am confused... ----- Original Message ----- then panel
appears. What am I doing wrong? Thank you very much for your help! Tobias
Make sure you are logged in, and that the email address of your Galaxy account matches the universe_wsgi.ini setting exactly (case may be important). Also the setting used to have problems with extra white space (but I think that was fixed).
Peter
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
I just hit ctrl c in the terminal to stop. Is that enough? ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev <galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:30:38 Subject: Re: [galaxy-dev] How to be an admin?
How is it that you're restarting the server?
It might be useful to check galaxy's log to see what's going on -- this would be paster.log in your galaxy directory or perhaps the foreground of the terminal you're executing galaxy from.
-Dannon
On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur <hohenauer@brain.riken.jp>wrote:
From: Peter Cock <p.j.a.cock@googlemail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: galaxy-dev@lists.bx.psu.edu Date: 2013-04-07 23:28:31 Subject: Re: [galaxy-dev] How to be an admin?
On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur <hohenauer@brain.riken.jp> wrote:
Hello,
I just installed and updated a local instance of Galaxy on my mac. I
created a user and set the according username (email) as admin in the universe_wsgi.ini file. When I save and restart the server no admin
That does not help. Actually, I tried to change random things in the universe_wsgi.ini, like setting the port to 8081, but none of the changes take effect when I restart the server. I am confused... ----- Original Message ----- then panel
appears. What am I doing wrong? Thank you very much for your help! Tobias
Make sure you are logged in, and that the email address of your Galaxy account matches the universe_wsgi.ini setting exactly (case may be important). Also the setting used to have problems with extra white space (but I think that was fixed).
Peter
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Yeah, if you're running it with just `run.sh`, that should work fine. One thing you can do if you're going to be tweaking a bunch of settings would be to run it with the reload option enabled `run.sh --reload`. When you change the port in universe_wsgi.ini in the galaxy directory, kill the server and restart, in the log at the end you should see something like: serving on 0.0.0.0:<new port> view at http://127.0.0.1:<new port> If you're not seeing that, I'd verify that you're editing the correct universe_wsgi.ini. Perhaps you have multiple galaxies installed somehow? On Tue, Apr 9, 2013 at 9:39 AM, Tobias Hohenaur <hohenauer@brain.riken.jp>wrote:
I just hit ctrl c in the terminal to stop. Is that enough? ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:30:38 Subject: Re: [galaxy-dev] How to be an admin?
How is it that you're restarting the server?
It might be useful to check galaxy's log to see what's going on -- this would be paster.log in your galaxy directory or perhaps the foreground of the terminal you're executing galaxy from.
-Dannon
On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote:
From: Peter Cock <p.j.a.cock@googlemail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: galaxy-dev@lists.bx.psu.edu Date: 2013-04-07 23:28:31 Subject: Re: [galaxy-dev] How to be an admin?
On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur <hohenauer@brain.riken.jp> wrote: > Hello, > > I just installed and updated a local instance of Galaxy on my mac. I
> created a user and set the according username (email) as admin in the > universe_wsgi.ini file. When I save and restart the server no admin
That does not help. Actually, I tried to change random things in the universe_wsgi.ini, like setting the port to 8081, but none of the changes take effect when I restart the server. I am confused... ----- Original Message ----- then panel
> appears. What am I doing wrong? > Thank you very much for your help! > Tobias
Make sure you are logged in, and that the email address of your Galaxy account matches the universe_wsgi.ini setting exactly (case may be important). Also the setting used to have problems with extra white space (but I think that was fixed).
Peter
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Thank you for hinting the reload option. I opened the universe_wsgi.ini in the galaxy-dist folder and changed the port to 8081, the host to 0.0.0.0, then saved. The server reloads, but the changes have not taken effect. It is still at 127.0.0.1 and 8080... As far as I can see there is no other universe_wsgi.ini file except one that is calles universe_wsgi.ini sample. ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev <galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:47:04 Subject: Re: [galaxy-dev] How to be an admin?
Yeah, if you're running it with just `run.sh`, that should work fine. One thing you can do if you're going to be tweaking a bunch of settings would be to run it with the reload option enabled `run.sh --reload`.
When you change the port in universe_wsgi.ini in the galaxy directory, kill the server and restart, in the log at the end you should see something like: serving on 0.0.0.0:<new port> view at http://127.0.0.1:<new port>
If you're not seeing that, I'd verify that you're editing the correct universe_wsgi.ini. Perhaps you have multiple galaxies installed somehow?
On Tue, Apr 9, 2013 at 9:39 AM, Tobias Hohenaur <hohenauer@brain.riken.jp>wrote:
I just hit ctrl c in the terminal to stop. Is that enough? ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:30:38 Subject: Re: [galaxy-dev] How to be an admin?
How is it that you're restarting the server?
It might be useful to check galaxy's log to see what's going on -- this would be paster.log in your galaxy directory or perhaps the foreground of the terminal you're executing galaxy from.
-Dannon
On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote:
That does not help. Actually, I tried to change random things in the universe_wsgi.ini, like setting the port to 8081, but none of the changes take effect when I restart the server. I am confused... ----- Original Message ----- >> From: Peter Cock <p.j.a.cock@googlemail.com> >> To: Tobias Hohenaur <hohenauer@brain.riken.jp> >> Cc: galaxy-dev@lists.bx.psu.edu >> Date: 2013-04-07 23:28:31 >> Subject: Re: [galaxy-dev] How to be an admin? >> >> On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur >> <hohenauer@brain.riken.jp> wrote: >> > Hello, >> > >> > I just installed and updated a local instance of Galaxy on my mac. I then >> > created a user and set the according username (email) as admin in the >> > universe_wsgi.ini file. When I save and restart the server no admin panel >> > appears. What am I doing wrong? >> > Thank you very much for your help! >> > Tobias >> >> Make sure you are logged in, and that the email address of your >> Galaxy account matches the universe_wsgi.ini setting exactly >> (case may be important). Also the setting used to have problems >> with extra white space (but I think that was fixed). >> >> Peter >> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Tobias, Maybe your Galaxy is running in daemon mode. If that is the case, if you do 'ps aux | grep universe' you will see something like: python ./scripts/paster.py serve universe_wsgi.ini --daemon You should first stop the daemon. Or you kill it, or you type in the galaxy home './run.sh stop'. Check again via ps to assure yourself the daemon has stopped. Now, start galaxy again. HTH, Marc -----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Tobias Hohenaur Sent: Tuesday, April 09, 2013 3:59 PM To: Dannon Baker Cc: Galaxy Dev Subject: Re: [galaxy-dev] How to be an admin? Thank you for hinting the reload option. I opened the universe_wsgi.ini in the galaxy-dist folder and changed the port to 8081, the host to 0.0.0.0, then saved. The server reloads, but the changes have not taken effect. It is still at 127.0.0.1 and 8080... As far as I can see there is no other universe_wsgi.ini file except one that is calles universe_wsgi.ini sample. ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev <galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:47:04 Subject: Re: [galaxy-dev] How to be an admin?
Yeah, if you're running it with just `run.sh`, that should work fine. One thing you can do if you're going to be tweaking a bunch of settings would be to run it with the reload option enabled `run.sh --reload`.
When you change the port in universe_wsgi.ini in the galaxy directory, kill the server and restart, in the log at the end you should see something like: serving on 0.0.0.0:<new port> view at http://127.0.0.1:<new port>
If you're not seeing that, I'd verify that you're editing the correct universe_wsgi.ini. Perhaps you have multiple galaxies installed somehow?
On Tue, Apr 9, 2013 at 9:39 AM, Tobias Hohenaur <hohenauer@brain.riken.jp>wrote:
I just hit ctrl c in the terminal to stop. Is that enough? ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:30:38 Subject: Re: [galaxy-dev] How to be an admin?
How is it that you're restarting the server?
It might be useful to check galaxy's log to see what's going on -- this would be paster.log in your galaxy directory or perhaps the foreground of the terminal you're executing galaxy from.
-Dannon
On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote:
That does not help. Actually, I tried to change random things in the universe_wsgi.ini, like setting the port to 8081, but none of the changes take effect when I restart the server. I am confused... ----- Original Message ----- >> From: Peter Cock <p.j.a.cock@googlemail.com> >> To: Tobias Hohenaur <hohenauer@brain.riken.jp> >> Cc: galaxy-dev@lists.bx.psu.edu >> Date: 2013-04-07 23:28:31 >> Subject: Re: [galaxy-dev] How to be an admin? >> >> On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur >> <hohenauer@brain.riken.jp> wrote: >> > Hello, >> > >> > I just installed and updated a local instance of Galaxy on my mac. I then >> > created a user and set the according username (email) as admin in the >> > universe_wsgi.ini file. When I save and restart the server no admin panel >> > appears. What am I doing wrong? >> > Thank you very much for your help! >> > Tobias >> >> Make sure you are logged in, and that the email address of your >> Galaxy account matches the universe_wsgi.ini setting exactly >> (case may be important). Also the setting used to have problems >> with extra white space (but I think that was fixed). >> >> Peter >> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ________________________________________ THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE. If the reader of this E-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately at ablynx@ablynx.com. Thank you for your co-operation. "NANOBODY" and "NANOCLONE" are registered trademarks of Ablynx N.V. ________________________________________
Hi, First make sure that the you are editing the correct universe_wsgi.ini file. Secondly, you must restart your server after you make changes to your settings file i.e universe_wsgi.ini. If you are running your server in daemon mode use following command to stop your server: *sh run.sh --stop-daemon* Then again start your server using the following command in a daemon mode: *sh run.sh --daemon* * * On Wed, Apr 10, 2013 at 3:38 AM, Marc Logghe <Marc.Logghe@ablynx.com> wrote:
Hi Tobias, Maybe your Galaxy is running in daemon mode. If that is the case, if you do 'ps aux | grep universe' you will see something like: python ./scripts/paster.py serve universe_wsgi.ini --daemon
You should first stop the daemon. Or you kill it, or you type in the galaxy home './run.sh stop'. Check again via ps to assure yourself the daemon has stopped. Now, start galaxy again. HTH, Marc
-----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto: galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Tobias Hohenaur Sent: Tuesday, April 09, 2013 3:59 PM To: Dannon Baker Cc: Galaxy Dev Subject: Re: [galaxy-dev] How to be an admin?
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:47:04 Subject: Re: [galaxy-dev] How to be an admin?
Yeah, if you're running it with just `run.sh`, that should work fine. One thing you can do if you're going to be tweaking a bunch of settings would be to run it with the reload option enabled `run.sh --reload`.
When you change the port in universe_wsgi.ini in the galaxy directory, kill the server and restart, in the log at the end you should see something
serving on 0.0.0.0:<new port> view at http://127.0.0.1:<new port>
If you're not seeing that, I'd verify that you're editing the correct universe_wsgi.ini. Perhaps you have multiple galaxies installed somehow?
On Tue, Apr 9, 2013 at 9:39 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote:
I just hit ctrl c in the terminal to stop. Is that enough? ----- Original Message -----
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:30:38 Subject: Re: [galaxy-dev] How to be an admin?
How is it that you're restarting the server?
It might be useful to check galaxy's log to see what's going on --
would be paster.log in your galaxy directory or perhaps the foreground of the terminal you're executing galaxy from.
-Dannon
On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote:
> That does not help. Actually, I tried to change random things in
> universe_wsgi.ini, like setting the port to 8081, but none of the changes > take effect when I restart the server. I am confused... > ----- Original Message ----- > >> From: Peter Cock <p.j.a.cock@googlemail.com> > >> To: Tobias Hohenaur <hohenauer@brain.riken.jp> > >> Cc: galaxy-dev@lists.bx.psu.edu > >> Date: 2013-04-07 23:28:31 > >> Subject: Re: [galaxy-dev] How to be an admin? > >> > >> On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur > >> <hohenauer@brain.riken.jp> wrote: > >> > Hello, > >> > > >> > I just installed and updated a local instance of Galaxy on my mac. I > then > >> > created a user and set the according username (email) as admin in the > >> > universe_wsgi.ini file. When I save and restart the server no admin > panel > >> > appears. What am I doing wrong? > >> > Thank you very much for your help! > >> > Tobias > >> > >> Make sure you are logged in, and that the email address of your > >> Galaxy account matches the universe_wsgi.ini setting exactly > >> (case may be important). Also the setting used to have
Thank you for hinting the reload option. I opened the universe_wsgi.ini in the galaxy-dist folder and changed the port to 8081, the host to 0.0.0.0, then saved. The server reloads, but the changes have not taken effect. It is still at 127.0.0.1 and 8080... As far as I can see there is no other universe_wsgi.ini file except one that is calles universe_wsgi.ini sample. ----- Original Message ----- like: this the problems
> >> with extra white space (but I think that was fixed). > >> > >> Peter > >> > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ________________________________________ THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE. If the reader of this E-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately at ablynx@ablynx.com. Thank you for your co-operation. "NANOBODY" and "NANOCLONE" are registered trademarks of Ablynx N.V. ________________________________________
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi , when I use: sh run.sh --stop-daemon to start the server, I get: No PID file exists in paster.pid when I use : ps aux | grep universe I get: tobikenobi 3013 0,0 0,0 2435548 0 s000 R+ 9:25pm 0:00.00 grep universe ----- Original Message -----
From: Sachit Adhikari <sachit.technerves@gmail.com> To: Marc Logghe <Marc.Logghe@ablynx.com> Cc: Tobias Hohenaur <hohenauer@brain.riken.jp>,Galaxy Dev <galaxy-dev@lists.bx.psu.edu> Date: 2013-04-10 17:54:23 Subject: Re: [galaxy-dev] How to be an admin?
Hi,
First make sure that the you are editing the correct universe_wsgi.ini file. Secondly, you must restart your server after you make changes to your settings file i.e universe_wsgi.ini. If you are running your server in daemon mode use following command to stop your server: *sh run.sh --stop-daemon* Then again start your server using the following command in a daemon mode: *sh run.sh --daemon* * *
On Wed, Apr 10, 2013 at 3:38 AM, Marc Logghe <Marc.Logghe@ablynx.com> wrote:
Hi Tobias, Maybe your Galaxy is running in daemon mode. If that is the case, if you do 'ps aux | grep universe' you will see something like: python ./scripts/paster.py serve universe_wsgi.ini --daemon
You should first stop the daemon. Or you kill it, or you type in the galaxy home './run.sh stop'. Check again via ps to assure yourself the daemon has stopped. Now, start galaxy again. HTH, Marc
-----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto: galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Tobias Hohenaur Sent: Tuesday, April 09, 2013 3:59 PM To: Dannon Baker Cc: Galaxy Dev Subject: Re: [galaxy-dev] How to be an admin?
From: Dannon Baker <dannon.baker@gmail.com> To: Tobias Hohenaur <hohenauer@brain.riken.jp> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> Date: 2013-04-09 22:47:04 Subject: Re: [galaxy-dev] How to be an admin?
Yeah, if you're running it with just `run.sh`, that should work fine. One thing you can do if you're going to be tweaking a bunch of settings would be to run it with the reload option enabled `run.sh --reload`.
When you change the port in universe_wsgi.ini in the galaxy directory, kill the server and restart, in the log at the end you should see something
serving on 0.0.0.0:<new port> view at http://127.0.0.1:<new port>
If you're not seeing that, I'd verify that you're editing the correct universe_wsgi.ini. Perhaps you have multiple galaxies installed somehow?
On Tue, Apr 9, 2013 at 9:39 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote:
I just hit ctrl c in the terminal to stop. Is that enough? ----- Original Message ----- >> From: Dannon Baker <dannon.baker@gmail.com> >> To: Tobias Hohenaur <hohenauer@brain.riken.jp> >> Cc: Peter Cock <p.j.a.cock@googlemail.com>,Galaxy Dev < galaxy-dev@lists.bx.psu.edu> >> Date: 2013-04-09 22:30:38 >> Subject: Re: [galaxy-dev] How to be an admin? >> >> How is it that you're restarting the server? >> >> It might be useful to check galaxy's log to see what's going on --
>> would be paster.log in your galaxy directory or perhaps the foreground of >> the terminal you're executing galaxy from. >> >> -Dannon >> >> >> On Tue, Apr 9, 2013 at 9:25 AM, Tobias Hohenaur < hohenauer@brain.riken.jp>wrote: >> >> > That does not help. Actually, I tried to change random things in
>> > universe_wsgi.ini, like setting the port to 8081, but none of the changes >> > take effect when I restart the server. I am confused... >> > ----- Original Message ----- >> > >> From: Peter Cock <p.j.a.cock@googlemail.com> >> > >> To: Tobias Hohenaur <hohenauer@brain.riken.jp> >> > >> Cc: galaxy-dev@lists.bx.psu.edu >> > >> Date: 2013-04-07 23:28:31 >> > >> Subject: Re: [galaxy-dev] How to be an admin? >> > >> >> > >> On Sun, Apr 7, 2013 at 1:27 PM, Tobias Hohenaur >> > >> <hohenauer@brain.riken.jp> wrote: >> > >> > Hello, >> > >> > >> > >> > I just installed and updated a local instance of Galaxy on my mac. I >> > then >> > >> > created a user and set the according username (email) as admin in the >> > >> > universe_wsgi.ini file. When I save and restart the server no admin >> > panel >> > >> > appears. What am I doing wrong? >> > >> > Thank you very much for your help! >> > >> > Tobias >> > >> >> > >> Make sure you are logged in, and that the email address of your >> > >> Galaxy account matches the universe_wsgi.ini setting exactly >> > >> (case may be important). Also the setting used to have
Thank you for hinting the reload option. I opened the universe_wsgi.ini in the galaxy-dist folder and changed the port to 8081, the host to 0.0.0.0, then saved. The server reloads, but the changes have not taken effect. It is still at 127.0.0.1 and 8080... As far as I can see there is no other universe_wsgi.ini file except one that is calles universe_wsgi.ini sample. ----- Original Message ----- like: this the problems
>> > >> with extra white space (but I think that was fixed). >> > >> >> > >> Peter >> > >> >> > ___________________________________________________________ >> > Please keep all replies on the list by using "reply all" >> > in your mail client. To manage your subscriptions to this >> > and other Galaxy lists, please use the interface at: >> > http://lists.bx.psu.edu/ >> > >> > To search Galaxy mailing lists use the unified search at: >> > http://galaxyproject.org/search/mailinglists/ >> > >> >>
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ________________________________________ THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE. If the reader of this E-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately at ablynx@ablynx.com. Thank you for your co-operation. "NANOBODY" and "NANOCLONE" are registered trademarks of Ablynx N.V. ________________________________________
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (5)
-
Dannon Baker -
Marc Logghe -
Peter Cock -
Sachit Adhikari -
Tobias Hohenaur