We are running a Galaxy instance at our institute (version 15.10). Since some month the speed/reaction time of the interface drastically decrease. Sometimes there is a lack of more than a minute loading a single tool. I restarted galaxy without any improvements. We are working with up to 3 people on this instance that should not be the problem. Does anyone have any idea? Disk-space? uptime of our server? big full database? ?? Cheers Jochen
Jochen We once had a similar, sudden performance problem, and found that the setting Galaxy.ini: debug = False Had accidentally been re-set to "True". Having "debug" turned on really, really slows down the galaxy app process.... So, check that debug = False. Regards Curtis -----Original Message----- From: galaxy-dev [mailto:galaxy-dev-bounces@lists.galaxyproject.org] On Behalf Of Jochen Bick Sent: Friday, December 9, 2016 6:05 AM To: galaxy-dev@lists.galaxyproject.org Subject: [galaxy-dev] Speedup Galaxy We are running a Galaxy instance at our institute (version 15.10). Since some month the speed/reaction time of the interface drastically decrease. Sometimes there is a lack of more than a minute loading a single tool. I restarted galaxy without any improvements. We are working with up to 3 people on this instance that should not be the problem. Does anyone have any idea? Disk-space? uptime of our server? big full database? ?? Cheers Jochen ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Thanks for your reply but in my case it did not solve the problem... has anyone else good ideas to speed up galaxy? Cheers Jochen On 09.12.2016 17:07, Hendrickson, Curtis (Campus) wrote:
Jochen
We once had a similar, sudden performance problem, and found that the setting
Galaxy.ini: debug = False
Had accidentally been re-set to "True". Having "debug" turned on really, really slows down the galaxy app process....
So, check that debug = False.
Regards Curtis
Hi Jochen, You might want to enable the heartbeat (see the relevant options in galaxy.ini), so you can see what the threads are actually doing during that period. This should give you some insight on the culprit. --nate On Mon, Dec 12, 2016 at 9:40 AM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Thanks for your reply but in my case it did not solve the problem... has anyone else good ideas to speed up galaxy?
Cheers Jochen
On 09.12.2016 17:07, Hendrickson, Curtis (Campus) wrote:
Jochen
We once had a similar, sudden performance problem, and found that the setting
Galaxy.ini: debug = False
Had accidentally been re-set to "True". Having "debug" turned on really, really slows down the galaxy app process....
So, check that debug = False.
Regards Curtis
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Thanks Nate, So since today the speed is much better ... I changed to debug = False and activated the heartbeat. But I have no idea what the actual problem was... I hope I can deactivate it soon, because it said that it will eat up disk space rapidly... Cheers Jochen On 12.12.2016 18:37, Nate Coraor wrote:
Hi Jochen,
You might want to enable the heartbeat (see the relevant options in galaxy.ini), so you can see what the threads are actually doing during that period. This should give you some insight on the culprit.
--nate
On Mon, Dec 12, 2016 at 9:40 AM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Thanks for your reply but in my case it did not solve the problem... has anyone else good ideas to speed up galaxy?
Cheers Jochen
On 09.12.2016 17:07, Hendrickson, Curtis (Campus) wrote:
Jochen
We once had a similar, sudden performance problem, and found that the setting
Galaxy.ini: debug = False
Had accidentally been re-set to "True". Having "debug" turned on really, really slows down the galaxy app process....
So, check that debug = False.
Regards Curtis
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- ETH Zurich *Jochen Bick* Animal Physiology Institute of Agricultural Sciences Postal address: Universitätstrasse 2 / LFW B 58.1 Office: Tannenstrasse 1 / TAN D 6.2 8092 Zurich, Switzerland Phone +41 44 632 28 25 jochen.bick@usys.ethz.ch <mailto:jochen.bick@usys.ethz.ch> www.ap.ethz.ch
It actually won't eat up that much, but keep an eye on it. If it's growing too quickly you can decrease the frequency. On Wed, Dec 14, 2016 at 9:48 AM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Thanks Nate,
So since today the speed is much better ... I changed to debug = False and activated the heartbeat. But I have no idea what the actual problem was...
I hope I can deactivate it soon, because it said that it will eat up disk space rapidly...
Cheers Jochen
Hi Jochen,
You might want to enable the heartbeat (see the relevant options in galaxy.ini), so you can see what the threads are actually doing during
On 12.12.2016 18:37, Nate Coraor wrote: that
period. This should give you some insight on the culprit.
--nate
On Mon, Dec 12, 2016 at 9:40 AM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Thanks for your reply but in my case it did not solve the problem... has anyone else good ideas to speed up galaxy?
Cheers Jochen
On 09.12.2016 17:07, Hendrickson, Curtis (Campus) wrote:
Jochen
We once had a similar, sudden performance problem, and found that the setting
Galaxy.ini: debug = False
Had accidentally been re-set to "True". Having "debug" turned on really, really slows down the galaxy app process....
So, check that debug = False.
Regards Curtis
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- ETH Zurich *Jochen Bick* Animal Physiology Institute of Agricultural Sciences Postal address: Universitätstrasse 2 / LFW B 58.1 Office: Tannenstrasse 1 / TAN D 6.2 8092 Zurich, Switzerland
Phone +41 44 632 28 25 jochen.bick@usys.ethz.ch <mailto:jochen.bick@usys.ethz.ch> www.ap.ethz.ch
participants (3)
-
Hendrickson, Curtis (Campus) -
Jochen Bick -
Nate Coraor