Hi galaxy users, while using galaxy with drmaa and real user on drm system, I would like to know if there's a way to set the variable PBS_O_LOGNAME to the real user name in the job_conf.xml : <param id="nativeSpecification">-v PBS_O_LOGNAME=[REAL_USER_NAME??] -q test -l mem=100gb </param> Thank you, Laure
Hi Laure, a hacky way it to use dynamic job destinations: https://wiki.galaxyproject.org/Admin/Config/Jobs#Dynamic_Destination_Mapping You can get the username via python and change "nativeSpecification" on demand. Hope this helps, Bjoern Am 14.09.2016 um 17:07 schrieb Laure QUINTRIC:
Hi galaxy users,
while using galaxy with drmaa and real user on drm system, I would like to know if there's a way to set the variable PBS_O_LOGNAME to the real user name in the job_conf.xml :
<param id="nativeSpecification">-v PBS_O_LOGNAME=[REAL_USER_NAME??] -q test -l mem=100gb </param>
Thank you,
Laure
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participants (2)
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Björn Grüning
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Laure QUINTRIC