Dear all,
I am trying to set up trackster for my local instance in galaxy. I did the following:
Uncommented from the universe_wsgi.ini; len_file_path = path/to/file/galaxy-dist/tool-data/shared/ucsc/chrom
Also I ran the following commands:
mkdir ./tool-data/shared/ucsc/chrom/ python ./cron/build_chrom_db.py ./tool-data/shared/ucsc/chrom/
However when I try to use trackster, I get the following message:
"A converted for this file is not installed. Please heck your datatypes_conf.xml file."
How exactly do I find out which converted files I am missing? I did the above steps in another instance of galaxy and Trackster works fine in there.
Thank you for your time, --Ricardo Perez
"A converted for this file is not installed. Please heck your datatypes_conf.xml file."
How exactly do I find out which converted files I am missing?
This information isn't easy to find yet, so I've created a card for it: https://trello.com/c/E3ReiSVU
If you haven't modified your datatypes_conf.xml, you can copy datatypes_conf.xml.sample to datatypes_conf.xml and the converter error should go away.
FYI, the complete instructions for setting up visualizations in Galaxy can be found here:
http://wiki.galaxyproject.org/Visualization%20Setup
Let us know if you run into other issues.
Best, J.
galaxy-dev@lists.galaxyproject.org