Thanks Marina this works perfectly, everything fully operational now very glad for your help! -Leandro On Thu, May 19, 2011 at 2:23 PM, Marina Gourtovaia <mg8@sanger.ac.uk> wrote:

Hi Leandro

I do not think the binding is env var aware. I used the following string in Galaxy drmaa configuration in universe_wsgi.ini

default_cluster_job_runner = drmaa://-q srpipeline -P pipeline/

-q for the queue and -P for the project

Marina

On 19/05/2011 12:54, Leandro Hermida wrote:

Hi Marina,

Thank you so much for your help, LSF DRMAA is working fine with Galaxy now.

One final problem though... if I specify the env var LSB_DEFAULTQUEUE to a specific queue the Galaxy server appears in the log to submit the job but it doesn't ever seem to get executed and looking in LSF with bjobs -u all we don't see any galaxy submitted jobs, strange. Is there something I am not setting up right with the particular queue?

best, Leandro

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