Someone should create an tools-iuc issue for this, I will certainly
participate also. I don't know anything RADSeq (or really much about
any kind of Seq) but I suspect I can find a way to help if there is a
TODO or ideas list that is tracked on github.
Tiago, if you like please create such an issue. For inspiration please
look at this one :)
Thanks all,
-John
On Mon, Nov 23, 2015 at 5:55 PM, Yvan Le Bras <yvan.le_bras(a)irisa.fr> wrote:
> Hi Tiago, Björn,
>
> I'm strongly interested by a RADseq hackathon! I begin to exchange with some
colleagues (Cced), indeed there will be at least 2 others french labs interested. Maria
have developped some scripts for STACKS, and putting it on the Galaxy will be cool. Here,
we have developped a recent update of our Stacks descriptors and wrappers, Anthony &
us think that it can be interesting to try using Interactive Environment to propose the
use of the Stacks webinterface + database to correct haplotypes...... or not ;)
Furthermore, we begin using other pipelines as Ddocent and it will be cool to put it on
Galaxy....
>
> So ready to go further with a remote hackathon. Maybe on March or April 2016 ?
>
> Wishing you the best.
>
> Cheers,
> Yvan
>
> ----- Mail original -----
>> De: "Björn Grüning" <bjoern.gruening(a)gmail.com>
>> À: "Tiago Antao" <tra(a)popgen.net>, "galaxy-dev"
<galaxy-dev(a)lists.galaxyproject.org>, "galaxy-iuc"
>> <galaxy-iuc(a)lists.bx.psu.edu>
>> Envoyé: Lundi 23 Novembre 2015 17:52:35
>> Objet: Re: [galaxy-dev] Potential Hackathon proposal: RADSeq
>>
>> Hi Tiago,
>>
>> I like this idea very much and I will try to help as much as I can.
>>
>> I hope someone else will join otherwise I will be in for a tandem hack :)
>>
>> Cheers,
>> Bjoern
>>
>> Am 16.11.2015 um 17:05 schrieb Tiago Antao:
>>> Dear all,
>>>
>>> This is an email to inquire about the potential community interest in
>>> having a RADSeq hackathon.
>>>
>>> There has been quite some interest in analyzing RADSeq with Galaxy. As
>>> far as I know there are essentially only two tools dedicated to this,
>>> wrapping stacks and prada.
>>>
>>> I have been exchanging emails with the authors of the stacks tool (Yvan
>>> is Cced here) and they seem to have interest in pursuing this also.
>>>
>>> Where I am based now, we have quite a few RADSeq users that can advise
>>> on needs of the RADSeq community (obviously if others have any ideas,
>>> those would be most welcome).
>>>
>>> We also have good connections to some of the researchers involved with
>>> creating the technology, whom I believe could provide some advice on
>>> what we need to implement.
>>>
>>> RADSeq is a cheap sequencing technology that is used by many
>>> resource-limited groups and they would potentially benefit a lot from
>>> easy-to-use galaxy tools.
>>>
>>> Any interest in this?
>>>
>>> Tiago
>>> ___________________________________________________________
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>>>
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>
> --
>
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
> Yvan Le Bras, PhD @Yvan2935 <°))))><
> e-Biogenouest project
http://www.e-biogenouest.org
> CNRS UMR 6074 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes Cedex
> tél.: +33 (0) 2 99 84 71 79 / +33 (0) 6.10.43.96.51
> yvan.le_bras(a)irisa.fr
>
> ___________________________________________________________
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