Yvan, this sounds great!
I think it's up to Tiago to pick a date :)
Am 23.11.2015 um 18:55 schrieb Yvan Le Bras:
Hi Tiago, Björn,
I'm strongly interested by a RADseq hackathon! I begin to exchange
with some colleagues (Cced), indeed there will be at least 2 others
french labs interested. Maria have developped some scripts for
STACKS, and putting it on the Galaxy will be cool. Here, we have
developped a recent update of our Stacks descriptors and wrappers,
Anthony & us think that it can be interesting to try using
Sweet! Have a look at this document were I collected some ideas how this
to propose the use of the Stacks webinterface
+ database to correct haplotypes...... or not ;) Furthermore, we
begin using other pipelines as Ddocent and it will be cool to put it
So ready to go further with a remote hackathon. Maybe on March or
April 2016 ?
I will leave this decision to Tiago :)
But this all sounds very interesting!
Wishing you the best.
----- Mail original -----
> De: "Björn Grüning" <bjoern.gruening(a)gmail.com> À: "Tiago
> <tra(a)popgen.net>, "galaxy-dev"
> <galaxy-dev(a)lists.galaxyproject.org>, "galaxy-iuc"
> <galaxy-iuc(a)lists.bx.psu.edu> Envoyé: Lundi 23 Novembre 2015
> 17:52:35 Objet: Re: [galaxy-dev] Potential Hackathon proposal:
> Hi Tiago,
> I like this idea very much and I will try to help as much as I
> I hope someone else will join otherwise I will be in for a tandem
> hack :)
> Cheers, Bjoern
> Am 16.11.2015 um 17:05 schrieb Tiago Antao:
>> Dear all,
>> This is an email to inquire about the potential community
>> interest in having a RADSeq hackathon.
>> There has been quite some interest in analyzing RADSeq with
>> Galaxy. As far as I know there are essentially only two tools
>> dedicated to this, wrapping stacks and prada.
>> I have been exchanging emails with the authors of the stacks tool
>> (Yvan is Cced here) and they seem to have interest in pursuing
>> this also.
>> Where I am based now, we have quite a few RADSeq users that can
>> advise on needs of the RADSeq community (obviously if others have
>> any ideas, those would be most welcome).
>> We also have good connections to some of the researchers involved
>> with creating the technology, whom I believe could provide some
>> advice on what we need to implement.
>> RADSeq is a cheap sequencing technology that is used by many
>> resource-limited groups and they would potentially benefit a lot
>> from easy-to-use galaxy tools.
>> Any interest in this?
>> Please keep all replies on the list by using "reply all" in your
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