Kaizaad Bilimorya wrote:

Hello Kanwei,

Hmmm, not really. All I know is that setup.sh fails.

$ cd galaxy_dist/ $ sh setup.sh $ echo $? 1

$ grep -B1 exit setup.sh CLEAN_PYTHON=`python ./scripts/check_python.py` [ $? -ne 0 ] && exit 1

$ python ./scripts/check_python.py python -ES

$ echo $? 1

Hi Kaizaad,

There was a bug in check_python.py that was fixed shortly after it was added to the process. Can you check your revision via 'hg id'?

--nate

thanks kaizaad

On Wed, 20 Jan 2010, Kanwei Li wrote:

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Hi Kaizaad,

Could you provide the exception that is raised?

Thanks,

Kanwei

On Wed, Jan 20, 2010 at 3:48 PM, Kaizaad Bilimorya kaizaad@sharcnet.ca wrote:

...

Hello,

Standard CentOS 5.4 install [root@mako1 scripts]# python -V Python 2.4.3

Following the instructions http://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy

but fails at "sh setup.sh" because "check_python.py" throws and exeption and returns "python -ES". Note sure what this means.

thanks kaizaad _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev

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Kaizaad Bilimorya wrote:

Hi Nate

I just downloaded it this morning via: hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist

Here is what the id shows: $ hg id 56efe838b9af tip

thanks -k

Hmm, check_python.py really shouldn't be returning 1 there. You could put a 'raise' after the except line in that file and see what it's throwing.

I hope to do away with both -E and -S in the near future, so we won't even need this check anymore.

--nate