Ilya, Despite the wrapper version numbers (which I'll update shortly to avoid further confusion), the current Cufflinks wrapper in both galaxy-central and galaxy-dist supports Cufflinks v1.0.3 However, not all new options for v1.0.3 are implemented the current wrappers; should you decide to implement additional options in the Cufflinks/compare/diff wrappers, please consider submitting a patch that we could incorporate into Galaxy. Best, J. On Jul 21, 2011, at 1:30 AM, Chorny, Ilya wrote:

Has anyone produced a newer version of the cufflinks wrapper? The current wrapper is for version 0.9.1.

Thanks,

Ilya

Ilya Chorny Ph.D. Bioinformatics – Intern ichorny@illumina.com 858-202-4582

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