xue dong wrote:
I also installed Galaxy, if i understand correctly, Galaxy has the
link
to UCSC so the user can get data from UCSC. since what i interested is
arabidopsis information, I hope Galaxy can retrive data form the locally
installed UCSC in future. I do not know if it is possible to make this
idea come ture.maybe some of you have done it. if yes, I am gratefully
if you can tell me the how to get it.
Hi Xue,
Sorry for the long delay in response. This can be done by copying the
existing UCSC tool config (tools/data_source/ucsc_tablebrowser.xml) and
changing the url to your local url:
<inputs
action="http://genome.ucsc.edu/cgi-bin/hgTables"
check_values="false" method="get">
Then add this new copy of the tool config to your tool_conf.xml.
--nate