Hi Evan, It looks like that message might actually list the two versions backwards. I'll check into it and, if that's the case, get a fix out shortly. In any event, you should be able to edit and re-save the workflow as indicated to keep moving forward. -Dannon On Tue, May 20, 2014 at 3:02 PM, Evan Bollig <boll0107@umn.edu> wrote:

Galaxy Team:

I'm confused. This warning appears when I import an old workflow into the latest version of galaxy-dist#stable.

As I interpret the first message, I see "galaxy has fastqc 0.3 installed, but the workflow was written with fastqc 0.52 and will need to be updated to use the version 0.3 tool". This must be wrong, no? Perhaps I'm installing tools from the wrong toolshed, but I would expect the main galaxy toolshed to have *newer*, not older versions of tools available as months progress. My guess is that your verbose message needs to be polished.

If you look at the second attached screenshot, I believe that confirms that I have fastqc 0.52 installed. In that case, you probably need to tell users, "fastqc: using version '0.52' instead of version '0.3' indicated in this workflow." (note that the version strings are swapped). Perhaps add a bit more to the message to avoid confusion.

Cheers,

-Evan Bollig Research Associate | Application Developer | User Support Consultant Minnesota Supercomputing Institute 599 Walter Library 612 624 1447 evan@msi.umn.edu boll0107@umn.edu

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