Hi Jeremy,
I made some more modifications to the wrappers to allow for the tools to pull the genome information from the input files. The only drawback is that there is no way to validate whether the input has the dbkey attribute as a parameter (can you suggest a way to validate?). Attached are the diff's to the current version in galaxy-central.
Best,
Ilya
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.commailto:ichorny@illumina.com Website: www.illumina.comhttp://www.illumina.com
I made some more modifications to the wrappers to allow for the tools to pull the genome information from the input files. The only drawback is that there is no way to validate whether the input has the dbkey attribute as a parameter (can you suggest a way to validate?). Attached are the diff’s to the current version in galaxy-central.
See Dan's recent commit for validation via data tables:
https://bitbucket.org/galaxy/galaxy-central/changeset/150069a23aad
Thanks, J.
Can you guys show me an example of how this is used in the xml file?
Thanks,
Ilya
From: Jeremy Goecks [mailto:jeremy.goecks@emory.edu] Sent: Thursday, October 20, 2011 7:03 PM To: Chorny, Ilya Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: update of cufflinks and tophat to use dbkey attribute of input files
I made some more modifications to the wrappers to allow for the tools to pull the genome information from the input files. The only drawback is that there is no way to validate whether the input has the dbkey attribute as a parameter (can you suggest a way to validate?). Attached are the diff's to the current version in galaxy-central.
See Dan's recent commit for validation via data tables:
https://bitbucket.org/galaxy/galaxy-central/changeset/150069a23aad
Thanks, J.
galaxy-dev@lists.galaxyproject.org
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Chorny, Ilya -
Jeremy Goecks