On Thu, Oct 13, 2011 at 2:10 PM, Jeremy Goecks <jeremy.goecks(a)emory.edu> wrote:
<version_command> is what you want:
A couple things to note:
*tool path isn't needed if the tool is in your galaxy user's path;
*your tool must have a --version command line option; if not, you'll have to
modify the command.
This functionality should be working as of latest Galaxy dist.
If you're still having trouble, it would be useful to try running a tool with
a known, functioning version command (e.g. Tophat, Bowtie, Cufflinks/
compare/diff) and seeing if it produces the version as output.
Let us know if you're still having problems.
I ran into a problem with this just now and filed an issue on it,
the <version_command> tag does not support an interpreter,