Hello Carlos, The cause of the server error is a tool shed issue which I've corrected, so you should now be able to install the gmap repository. I've installed the repository locally and it seems to be ok (althoug I haven't executed contained tools), but it's in a strange state in the tool shed probably because all of it's contents were deleted except the tool_dependencies.xml file in the repository tip: Changeset 6adc485b6dc0 added: tool_dependencies.xml removed: README gmap.xml gmap_build.xml gsnap.xml iit_store.xml lib/galaxy/datatypes/gmap.py snpindex.xml tool-data/datatypes_conf.xml tool-data/gmap_indices.loc.sample You can contact the repository owner via the "Contact repository owner" option in the "Repository Actions" pop-up menu when viewing the repository. Greg Von Kuster On Oct 24, 2012, at 12:27 PM, Carlos Borroto wrote:

Hi,

I get a "HTTPError: HTTP Error 500: Internal Server Error"(see full error trace below) when trying to install GMAP from the main toolshed. Is there a way to report this to the tool authors?

Thanks, Carlos

URL: http://galaxy.bfx.brel.local/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=4131098bea459833&changeset_revisions=561503a442f0 File '/local/opt/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', line 91 in __call__ return self.app( environ, start_response ) File '/local/opt/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/local/opt/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 205 in decorator return func( self, trans, *args, **kwargs ) File '/local/opt/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 1178 in prepare_for_install response = urllib2.urlopen( url ) File '/usr/lib64/python2.6/urllib2.py', line 126 in urlopen return _opener.open(url, data, timeout) File '/usr/lib64/python2.6/urllib2.py', line 397 in open response = meth(req, response) File '/usr/lib64/python2.6/urllib2.py', line 510 in http_response 'http', request, response, code, msg, hdrs) File '/usr/lib64/python2.6/urllib2.py', line 435 in error return self._call_chain(*args) File '/usr/lib64/python2.6/urllib2.py', line 369 in _call_chain result = func(*args) File '/usr/lib64/python2.6/urllib2.py', line 518 in http_error_default raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) HTTPError: HTTP Error 500: Internal Server Error ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

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