Vipin TS wrote:

I tried to run the tool with a small input file. Then that case also the test fails and returns the same error message.

FAIL: mGenePredict ( mgenepredict ) > Test-1 ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/galaxy/galaxy-2.1.2009/test/functional/test_toolbox.py", line 114, in test_tool self.do_it() File "/home/galaxy/galaxy-2.1.2009/test/functional/test_toolbox.py", line 54, in do_it self.verify_dataset_correctness( file ) File "/home/galaxy/galaxy-2.1.2009/test/base/twilltestcase.py", line 323, in verify_dataset_correctness if wait: self.wait() #wait for job to finish File "/home/galaxy/galaxy-2.1.2009/test/base/twilltestcase.py", line 617, in wait self.assertNotEqual(count, maxiter) AssertionError: 20 == 20

Also I can find that the job is not finished even though I got the fail message. I confirmed the same, when I run the test again it produces an error message stating that the Galaxy port is already in use.

I hope my assumption is true, if not please let me know.

Hi Vipin, You are correct - the job is not finishing before the test framework gives up. By default the test framework will wait for three and a half minutes before giving up, so you may want to determine if your test can shortened further. --nate