Hi, I have built up a large collection of Galaxy data on my local account and I am now finding the following operations very slow: Showing saved histories Refreshing a history containing many data items Opening a library with ~200 files Is there anyway to speed up performance? I am using a mysql database. Would postgres help? I am yet to see a reliable way of converting between mysql and postgres so haven't done this yet. Thanks Shaun Webb -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
Hi Shaun,
I have built up a large collection of Galaxy data on my local account and I am now finding the following operations very slow:
Showing saved histories
I just committed a fix in galaxy-central that should help out considerably: https://bitbucket.org/galaxy/galaxy-central/changeset/7850b1df5d39 Let us know if you continue to have problems here.
Refreshing a history containing many data items Opening a library with ~200 files
These are known issues that we plan to work on in the future; however, we're not actively working on them right now.
I am using a mysql database. Would postgres help? I am yet to see a reliable way of converting between mysql and postgres so haven't done this yet.
Changing databases is unlikely to speed up performance much; the bottleneck is in the python/mako code. Thanks, J.
participants (2)
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Jeremy Goecks
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SHAUN WEBB