Thanks a lot Nate! You are right!
yum install mariadb-devel
did the trick.
Cheers,
Makis
From: nate(a)bx.psu.edu
Date: Thu, 25 Feb 2016 10:12:51 -0500
Subject: Re: [galaxy-dev] Galaxy 16.01 Release
To: makis4ever(a)hotmail.com
CC: galaxy-dev(a)lists.galaxyproject.org
On Thu, Feb 25, 2016 at 2:49 AM, Makis Ladoukakis <makis4ever(a)hotmail.com> wrote:
Just upgraded from the last version and after I run the run.sh script I get the following
error:
mysql_config: command not found
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-xd3cnM/MySQL-python/setup.py", line 17, in
<module>
metadata, options = get_config()
File "setup_posix.py", line 43, in get_config
libs = mysql_config("libs_r")
File "setup_posix.py", line 25, in mysql_config
raise EnvironmentError("%s not found" % (mysql_config.path,))
EnvironmentError: mysql_config not found
Any idea why?
I am running on CentOS 7.1.1503 with MariaDB installed.
Hi Makis,
Please make sure that you have the -devel package for MariaDB installed. MySQL_Python is
looking for the `mysql_config` command to be able to build, but it's not present on
your system.
--nate
Kind regards,
Makis
From: nate(a)bx.psu.edu
Date: Wed, 24 Feb 2016 16:56:19 -0500
To: galaxy-announce(a)lists.galaxyproject.org; galaxy-dev(a)lists.galaxyproject.org
CC: galaxy-committers(a)lists.galaxyproject.org
Subject: [galaxy-dev] Galaxy 16.01 Release
The Galaxy Committers team is pleased to announce the January 2016 (v16.01) release of
Galaxy. Galaxy administrators should also be aware of the security announcements that I am
posting simultaneously with this release announcement. The release notes follow.
From:
https://docs.galaxyproject.org/en/master/releases/16.01_announce.html
January 2016 Galaxy Release (v 16.01)
Highlights
Interactive Tours
The interactive tours framework allows developers and deployers to build interactive
tutorials for users superimposed on the actual Galaxy web front end. Unlike video
tutorials, these will not become stale and are truly interactive (allowing users to
actually navigate and interact with Galaxy). Galaxy 16.01 ships with two example tours and
new ones can easily be added by creating a small YAML file describing the tour. Try the
Galaxy UI tour on Main.
Wheels
Galaxy’s Python dependencies have traditionally been distributed as eggs using custom
dependency management code to enable Galaxy to distribute binary dependencies (enabling
quick downloads and minimal system requirements). With this release all of that
infrastructure has been replaced with a modern Python infrastructure based on pip and
wheels. Work done as part of this to enable binary dependencies on Linux has been included
with the recently released pip 8.
Detailed documentation on these changes and their impact under a variety of Galaxy
deployment scenarios can be found in the Galaxy Framework Dependencies section of the
Admin documentation.
Nested Workflows
Workflows may now run other workflows as a single abstract step in the parent workflow.
This allows for reusing or subworkflows in your analyses.
Github
New% git clone -b master
https://github.com/galaxyproject/galaxy.gitUpdate to latest
stable release% git checkout master && pull --ff-only origin masterUpdate to exact
version% git checkout v16.01
BitBucket
Upgrade% hg pull% hg update latest_16.01
See our wiki for additional details regarding the source code locations.
Deprecation Notices
Barring a strong outcry from deployers, 16.01 will be the last release of Galaxy to
support Python 2.6. For more information, see Galaxy Github Issue #1596.
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