Dear Sir,
I used your "Convert Format" from gff file of NCBI. but I encounter the following message. What can I do?
Best regards, Chang-Hyuk Yoo. Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.
Hi Chang-Hyuk,
Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look.
Vipin | Rätsch Lab
On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 chyoo@e-biogen.com wrote:
Dear Sir,
I used your "Convert Format" from gff file of NCBI. but I encounter the following message. What can I do?
Best regards, Chang-Hyuk Yoo. Traceback (most recent call last): File "/home/galaxy/shed_tools/ toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.
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Dear Sir,
that is all of error message. I attached the file to be tried.
best regards, Chang-Hyuk Yoo.
2016-02-25 오전 4:13에 Vipin TS 이(가) 쓴 글:
Hi Chang-Hyuk,
Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look.
Vipin | Rätsch Lab
On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 <chyoo@e-biogen.com mailto:chyoo@e-biogen.com> wrote:
Dear Sir, I used your "Convert Format" from gff file of NCBI. but I encounter the following message. What can I do? Best regards, Chang-Hyuk Yoo. Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py <http://toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py>", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Chang-Hyuk,
If you click on the bug icon for your error'd dataset you should be able to get the full traceback.
Thanks for using Galaxy,
Dan
Dear Sir,
that is all of error message. I attached the file to be tried.
best regards, Chang-Hyuk Yoo.
2016-02-25 오전 4:13에 Vipin TS 이(가) 쓴 글:
Hi Chang-Hyuk,
Looks like the traceback truncated, Could you please pass me the complete error message from the job run, then I will have a look.
Vipin | Rätsch Lab
On Tue, Feb 23, 2016 at 11:04 PM, 유창혁 chyoo@e-biogen.com wrote: Dear Sir,
I used your "Convert Format" from gff file of NCBI. but I encounter the following message. What can I do?
Best regards, Chang-Hyuk Yoo. Traceback (most recent call last): File "/home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/vipints/fml_gff3togtf/5c6f33e20fcc/fml_gff3togtf/gff_to_gtf.py", line 76, in <module> printGTF(Transcriptdb) File "/home/galaxy/shed_tools/toolshed.g2.
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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<GCF_000005845.2_ASM584v2_genomic.gff>___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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galaxy-dev@lists.galaxyproject.org
-
Daniel Blankenberg -
Vipin TS -
유창혁